| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,800,888 – 3,800,956 |
| Length | 68 |
| Max. P | 0.607217 |
| Location | 3,800,888 – 3,800,956 |
|---|---|
| Length | 68 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 70.28 |
| Shannon entropy | 0.55735 |
| G+C content | 0.49953 |
| Mean single sequence MFE | -17.89 |
| Consensus MFE | -8.99 |
| Energy contribution | -8.59 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3800888 68 + 24543557 UGAUUUCAGCGAGUCAAAGAUAAUGCAAGAGGUAACUAGACCAUUGACUGCGAUGUCAAGGUCGCUCG .........(((((.........(((.....)))....((((.(((((......)))))))))))))) ( -17.10, z-score = -1.08, R) >droPer1.super_41 219562 60 + 728894 ----UUCCGCGUGCCAAGGACGCGACAA----UCACAAUGGGGUUGGCUUUGCCACAGAGCUCGCGCG ----...(((((.(....))))))....----........(.((.(((((((...))))))).)).). ( -17.80, z-score = 0.27, R) >dp4.chrXR_group6 6860756 60 + 13314419 ----UUCCGCGUGCCAAGGACGCGACAA----UCACAAUGGGGUUGGCUUUGCCACAGAGCUCGCGCG ----...(((((.(....))))))....----........(.((.(((((((...))))))).)).). ( -17.80, z-score = 0.27, R) >droEre2.scaffold_4784 6498617 66 + 25762168 UGACUUGUGCG--UCAAAGAUAAUGCAAAUGGUAACUAGACCAUUGACUGCGAUGUCAAGGUCGCCUG ..(((..((((--(........)))))...))).....((((.(((((......)))))))))..... ( -18.20, z-score = -2.00, R) >droYak2.chr3L 4358008 68 + 24197627 UGAUUUGUGCGAGUCAAAGAUAGUGCAAAUGGUAACUAGACCAUUGACUGCUAUGUCAAGGUCGCCUG ..(((((..(..(((...))).)..)))))(((.....((((.(((((......)))))))))))).. ( -19.70, z-score = -2.19, R) >droSec1.super_2 3795119 68 + 7591821 UGAUUUGUGCGAGUCAAAGAUAAUGCAAGAGGUAACUAGACCAUUGACUGCGAUGUCAAGGUCGCCAG ((((((....))))))..............(((.....((((.(((((......)))))))))))).. ( -17.30, z-score = -1.44, R) >droSim1.chr3L 3341317 68 + 22553184 UGAUUUGUGCGAGUCAAAGAUAAUGCAAGAGGUAACUAGACCAUUGACUGCGAUGUCAAGGUCGCCAG ((((((....))))))..............(((.....((((.(((((......)))))))))))).. ( -17.30, z-score = -1.44, R) >consensus UGAUUUGUGCGAGUCAAAGAUAAUGCAAGAGGUAACUAGACCAUUGACUGCGAUGUCAAGGUCGCCCG ........((.............(((.....)))....((((.(((((......)))))))))))... ( -8.99 = -8.59 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:31 2011