| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,800,685 – 3,800,834 |
| Length | 149 |
| Max. P | 0.927917 |
| Location | 3,800,685 – 3,800,834 |
|---|---|
| Length | 149 |
| Sequences | 3 |
| Columns | 169 |
| Reading direction | forward |
| Mean pairwise identity | 70.32 |
| Shannon entropy | 0.41832 |
| G+C content | 0.31011 |
| Mean single sequence MFE | -30.97 |
| Consensus MFE | -14.94 |
| Energy contribution | -16.73 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3800685 149 + 24543557 CGUUUCGGUCGCUGGAUUUGCUAUCCAGUAUUUACUACAAAUAUUACACUAAAAUCGUUAGAAAUAAAUUUUCUUUAGAAAAUACACACUGAAUUGUUU---------------ACCAUUUCAGCGACCCAUUCACACUGUU-----AAAAUACGAUUUAUAAAAUUUA ......((((((((((..((.((..((((...................((((.....))))......((((((....)))))).........))))..)---------------).)).)))))))))).............-----...................... ( -25.00, z-score = -1.89, R) >droSec1.super_2 3794854 168 + 7591821 CGUUUAGGUCGCUGGAUUUGCUAUCCAGUAUUUACUACAAAUAUUACACUAAGAUCGCUAGAAAUAAAUUUUCUUUAGAAAUUACACACUGAAUUGUUUUUAGCGACCCAUCG-ACACUGAUACCAAAUCUCUGAUUGUUUAACUUAAAAAUUUGAUUUAUAAAAUUUG .((((((((((((((((.....))))))).........................(((((((((((((......(((((..........))))))))))))))))))......)-)).)))).)).(((((...((((............)))).))))).......... ( -30.70, z-score = -2.20, R) >droEre2.scaffold_4784 6498365 163 + 25762168 CGUUUAGGUCGCUGGAUUUGAUAUCCAGUACUUAUUGCAAAUACAAC--UAAAAUCGCGAAACACCCAUUUGCUUUAGAAUAUACACACAGUAUUAUUUU----GACCCACAACACGGUGUUACAAAAUCGCUGGUAAUUUAAUUCAAAAACGCGAUUUAUAGAAAAUU .((.(((((.(((((((.....))))))))))))..))........(--((((((((((.((((((...(((..(((((((((((.....))).))))))----))....)))...))))))..........(((.........)))....)))))))).)))...... ( -37.20, z-score = -3.18, R) >consensus CGUUUAGGUCGCUGGAUUUGCUAUCCAGUAUUUACUACAAAUAUUACACUAAAAUCGCUAGAAAUAAAUUUUCUUUAGAAAAUACACACUGAAUUGUUUU____GACCCA____ACAAUGUUACCAAAUCACUGAUAAUUUAA_U_AAAAAUACGAUUUAUAAAAUUUA .((.(((((.(((((((.....))))))))))))..)).............(((((((.........((((((....))))))................................(((((.........)))))..................))))))).......... (-14.94 = -16.73 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:31 2011