| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,771,019 – 3,771,132 |
| Length | 113 |
| Max. P | 0.662599 |
| Location | 3,771,019 – 3,771,132 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.38 |
| Shannon entropy | 0.25469 |
| G+C content | 0.41065 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -12.82 |
| Energy contribution | -13.82 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3771019 113 + 24543557 ------ACCCAUUGCAUCUUCCCACACCGAGCAGUUAAUUAAUUUCAAACUAAUUUGUUUCCCAGUCCAAAAGAUCAUAAAAUCGGCAUACCCAACC-GGCUGGUAAACAGAUAUUACAC ------....(((((.((..........))))))).................((((((((.((((((.....(((......)))((.....))....-)))))).))))))))....... ( -20.10, z-score = -2.38, R) >droSim1.chr3L 3311298 112 + 22553184 ------GACCCCUGCAUCUUCCCACACCGAGCAGCUAAUUAAUUUCAAACUAAUUUGUUUCCCAGUCCAAAAGACCAAAAAAUCGGCAUACCCAACCCGGCUGGUAAACAGAU--UACAC ------.....((((.((..........))))))................((((((((((.((((((.....((........))((.....)).....)))))).))))))))--))... ( -21.40, z-score = -2.78, R) >droSec1.super_2 3762069 112 + 7591821 ------GCCCCCUGCAUCUUCUCACACCGAGCAGUUAAUUAAUUUCAAACUAAUUUGUUUCCCAGUCCAAAAGACCAUAAAAUCGGCAUACCCAACCCGGCUGGUAAACAGAU--UACAC ------.....((((.((..........))))))................((((((((((.((((((.....((........))((.....)).....)))))).))))))))--))... ( -21.60, z-score = -2.76, R) >droYak2.chr3L 4325714 117 + 24197627 UCGUGCACCUCGUGCAUCUUCCCACACAAAGCAGUUAAUUAAUUUCCAACUAAUAUGUUUUCCAGUCCAAAAGAUCAUAUAAUCGGCAUACCCCACU-GGCUGGUAAACAAAU--UACAC ..((((((...)))))).................................((((.(((((.((((.(((...(((......)))((......))..)-)))))).))))).))--))... ( -21.20, z-score = -2.11, R) >droEre2.scaffold_4784 6466559 111 + 25762168 ------UUCAUAUGCAUCUUCCCACACACAGCAGUUAAUUAAUUUCAAACAAAUAUGUCUUUCAGCGCAAAAGACCAUAAAAUCGGCAUACCCAACA-GGCUGGUAAACAAAA--UACAC ------...................((.((((.(((.................(((((((((.......))))).)))).....((.....))))).-.))))))........--..... ( -11.70, z-score = 0.05, R) >consensus ______ACCCCCUGCAUCUUCCCACACCGAGCAGUUAAUUAAUUUCAAACUAAUUUGUUUCCCAGUCCAAAAGACCAUAAAAUCGGCAUACCCAACC_GGCUGGUAAACAGAU__UACAC ...........((((...............))))..................((((((((.((((((.....((........))((.....)).....)))))).))))))))....... (-12.82 = -13.82 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:25 2011