| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,267,729 – 4,267,841 |
| Length | 112 |
| Max. P | 0.792748 |
| Location | 4,267,729 – 4,267,841 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.29 |
| Shannon entropy | 0.28938 |
| G+C content | 0.31386 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.98 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.792748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4267729 112 + 23011544 --UUUAUAUUU------UAGUAUAUAAAUAUUUUCAUUUCAUUCUCAAAGACUCGUUGAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCACCCCAAGCAUUUUCUUUCAGGGUUAAACC --(((((((..------....)))))))........(((.(((((.(((((...(((..((((.(((((.(((....))).)))))))))......)))....))))).))))).))).. ( -16.50, z-score = -0.36, R) >droEre2.scaffold_4929 4344338 120 + 26641161 UUCUCAUACAUUAAAGGCAGUAUAUAAAUGUUUUUAUUUCAUUCUGAAAGACUUGUUCAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCACGCCAAGCAUUUUCUUUCAGGGUUAAACC ...........((((((((.........))))))))(((.(((((((((((((((....((((.(((((.(((....))).)))))))))....)))).....))))))))))).))).. ( -26.90, z-score = -2.56, R) >droYak2.chr2L 4295986 99 + 22324452 ---------------------UUUGAUAUAUUUUUGUUUCAUUCUGAAGGACUCGUUCAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCGCCCCAAGCAUUUUCUUUCAGGGUUAAACC ---------------------..............((((.(((((((((((........((((.(((((.(((....))).)))))))))((.....))....))))))))))).)))). ( -25.50, z-score = -2.63, R) >droSim1.chr2L 4188279 117 + 22036055 --UUUACAUAUAUAAA-UAGUAUAUAAAUAUUUUCAUUUCAUUCUCAAAGACUCGUUGAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCACCCCAAGCAUUUUCUUUCAGGGUUAAACC --.....((((((...-..))))))...........(((.(((((.(((((...(((..((((.(((((.(((....))).)))))))))......)))....))))).))))).))).. ( -16.00, z-score = -0.12, R) >consensus __UUUAUAUAU______UAGUAUAUAAAUAUUUUCAUUUCAUUCUCAAAGACUCGUUCAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCACCCCAAGCAUUUUCUUUCAGGGUUAAACC ....................................(((.(((((((((((...(((..((((.(((((.(((....))).)))))))))......)))....))))))))))).))).. (-17.66 = -17.98 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:55 2011