| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,769,680 – 3,769,781 |
| Length | 101 |
| Max. P | 0.685544 |
| Location | 3,769,680 – 3,769,781 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 72.86 |
| Shannon entropy | 0.51312 |
| G+C content | 0.35781 |
| Mean single sequence MFE | -18.12 |
| Consensus MFE | -8.43 |
| Energy contribution | -10.19 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3769680 101 + 24543557 UCACAACAAAGAAAUACAAAAUGCACUGCCAACGGUGCGUAAAAUCCUAUUAGGCA-GGUCAUUAAAAGGGA---GGAUUUUUAA-ACAAAGUAUUGUAUAAAAAA .............((((((.((((((((....))))))))((((((((.((((...-.....)))).....)---)))))))...-........))))))...... ( -19.30, z-score = -2.03, R) >droSim1.chr3L 3309956 101 + 22553184 UCACAACAAAGAAAUACAAAGUGCACUGCCAACGGUGCGUAAAAUCCUAUUACUCA-GGUCAUUAAAAGGGA---GGAUUUUUAA-ACAAAUUAUUGUAUAAAAAU .............((((((...((((((....))))))((((((((((....(((.-...........))))---)))))))...-))......))))))...... ( -18.40, z-score = -1.93, R) >droSec1.super_2 3760715 101 + 7591821 UCACAACAAAGAAAUACAAAAUGCACUGCCAACGGUGCGUAAAAUCCUAUUACUCA-GGUCAUUAAAAGGGA---GGAUUUUUAA-ACAAAUUAUUGUACAAAAAU ..............(((((.((((((((....))))))))((((((((....(((.-...........))))---)))))))...-........)))))....... ( -18.50, z-score = -2.34, R) >droYak2.chr3L 4324183 100 + 24197627 UCACAACAAAGAAACACAAAAUGCACUGGCAAUGGUGCGUAAAAUCCUAUUACUCA-GGUCAUUAAAAGGGC---GGAUUUUUAA-ACGAUUUAUUGUAAAAAAA- .....((((.(((.(.....(((((((......)))))))(((((((.........-.(((........)))---)))))))...-..).))).)))).......- ( -15.10, z-score = -0.45, R) >droEre2.scaffold_4784 6465174 101 + 25762168 UCACAACAAAGAAACACUAAAUGCACUGGCAACGGUGCGUAAAAUCCUAUUACUCA-GGUCAUUAAAAGGGA---GGAUCUUUAA-ACUAUUUAUUGUGAAAACAC ((((((.(((..........((((((((....))))))))...(((((....(((.-...........))))---))))......-....))).))))))...... ( -23.00, z-score = -3.35, R) >dp4.chrXR_group6 6825615 98 + 13314419 --------CCGCUCUCCACCCCGCCCCGCCCCCUGGCCACAAAAAUAAGUUGUUUACAAUUCUUGGGAAACAUUUGAAUAGCUGCCACAUUGCAUGCCACACAAAU --------................((((((....)))..........(((((....)))))...)))....(((((....(((((......))).))....))))) ( -14.40, z-score = 0.92, R) >consensus UCACAACAAAGAAAUACAAAAUGCACUGCCAACGGUGCGUAAAAUCCUAUUACUCA_GGUCAUUAAAAGGGA___GGAUUUUUAA_ACAAAUUAUUGUAAAAAAAU ..............(((((.((((((((....))))))))(((((((.....(((.............)))....)))))))............)))))....... ( -8.43 = -10.19 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:24 2011