| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,758,465 – 3,758,556 |
| Length | 91 |
| Max. P | 0.877626 |
| Location | 3,758,465 – 3,758,556 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 93.04 |
| Shannon entropy | 0.11330 |
| G+C content | 0.35641 |
| Mean single sequence MFE | -16.65 |
| Consensus MFE | -9.66 |
| Energy contribution | -9.47 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.34 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3758465 91 - 24543557 ACCAACCAAAUCACCAAUAACAACUACUCCAACAACC-UUAAAAAAUCGAAGGAUAAGAAAUUAAUUGGAGAGACAAGCGAAUCAGCUUGAA .......................((.((((((...((-((.........)))).(((....))).)))))))).(((((......))))).. ( -18.10, z-score = -4.84, R) >droYak2.chr3L 4312729 91 - 24197627 ACCAACUAAAUCACCAAUAACAACUACUUCAACAACCUUUUCAAAAUCGAAGGAUAAGAAGUUAAUU-GAGAGACAAGCGAAUCAGCUUGAA ....................(((..(((((.....(((((........)))))....)))))...))-).....(((((......))))).. ( -15.30, z-score = -2.74, R) >droSec1.super_2 3749703 90 - 7591821 ACCAACCGAAUCACCAAUAACAACUACUCCAACAAUC-UUAAAAAAUCGAAGGAUUAGAAGUUAAUU-GAGAGGCAAGCGAAUCAGCUUGAA ..........................((((((....(-((....((((....))))..)))....))-).))).(((((......))))).. ( -15.70, z-score = -2.23, R) >droSim1.chr3L 3298138 90 - 22553184 ACCAACCAAAUCACCAAUAACAGCUACUCCAACAAGC-UUAAAAAAUCGAAGGAUAAGAAGUUAAUU-GAGAGACAAGCGAAUCAGCUUGAA ..........................((((((..(((-((.....(((....)))...)))))..))-).))).(((((......))))).. ( -17.50, z-score = -3.54, R) >consensus ACCAACCAAAUCACCAAUAACAACUACUCCAACAACC_UUAAAAAAUCGAAGGAUAAGAAGUUAAUU_GAGAGACAAGCGAAUCAGCUUGAA .......................((.(((................(((....))).............))))).(((((......))))).. ( -9.66 = -9.47 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:23 2011