| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,722,117 – 3,722,261 |
| Length | 144 |
| Max. P | 0.811604 |
| Location | 3,722,117 – 3,722,261 |
|---|---|
| Length | 144 |
| Sequences | 8 |
| Columns | 165 |
| Reading direction | forward |
| Mean pairwise identity | 69.37 |
| Shannon entropy | 0.59690 |
| G+C content | 0.56539 |
| Mean single sequence MFE | -53.31 |
| Consensus MFE | -24.90 |
| Energy contribution | -24.13 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3722117 144 + 24543557 --------------GCACCCAGCUUCAUUUGGUAAUAA--CAU--UUAGUACUCACUUGAGCGAAUAGUUAUUGCCCGCCGCAUCCUGGCGAACGACCAGCGGUCGUUGGUUGGCGGAUUGUUG---GGCCGCAGCUGCGGCAGCUGCCGCCAUCGAGCCAAUAC --------------....((((((......((((((((--(((--((....(((....))).)))).)))))))))(((((.....)))))(((((((...))))))))))))).((.(((...---(((.(((((((...))))))).)))..))).))..... ( -55.40, z-score = -1.85, R) >droWil1.scaffold_180955 1600392 128 + 2875958 ---------------------------------AAAAACACUUGGUUCC-ACUUACUUGAGCGAAUAGUUAUUCCCUGUGGCAUCUUGACGCACCACCAAAGGACGUUGACUUGCCGAUUGUUG---UGCAGCGGCAGCUGCUGCCGCUGCCAUAGAACCAAUGC ---------------------------------.....((.(((((((.-.........(((((((((.......))))((((..(..(((..((......)).)))..)..))))..)))))(---.((((((((((...)))))))))))...))))))))). ( -44.70, z-score = -3.18, R) >droGri2.scaffold_15110 10484039 145 + 24565398 ---------------GUGACCACUAUUGGGUGGUGGGGCAGUUCAGUU--ACUCACUUGAGCGAAUAGUUAUUGCCCGCCGCAUCCUGUCGCACCACCAACGGACGCUGACUGGCCGACUGUUG---AGCGGCAGCAGCAGCUGCUGCUGCCAUGGAGCCGAUGC ---------------...((((((....)))))).(((((((....(.--.(((....)))..)......)))))))...(((((.....((.(((.((((((.((((....)).)).))))))---...(((((((((....))))))))).))).)).))))) ( -59.80, z-score = -1.35, R) >droMoj3.scaffold_6680 22010079 164 - 24764193 GCAACUAUCGUAGAGUAAAAUUCGAUUGCAAUUAAAGUCUCAUCACUGG-ACUUACUUGAGCGAAUAGUUGUUGCCCGCCGCAUCCUGGCGCACCACCAAGGGACGCUGGUUGGCCGACUGCUGCUGGGCGGCAGCGGCAGCUGCGGCUGCCAUGGAGCCGAUGC (((((((((((.((((((.....((((........))))(((....)))-..))))))..))).))))))))........((((((..(((..((.....))..)))..)..((((....((((((....))))))((((((....))))))...).)))))))) ( -61.40, z-score = -0.34, R) >droVir3.scaffold_13049 20894036 140 - 25233164 ------------------GACACUA--GAGCUACACAGUUGACCAGCG--ACUUACUUGAGCGAAUAGUUGUUGCCCGCCGCAUCCUGACGCACCACGAGUGGACGCUGAUUGGCCGACUGUUG---AGCCGCUGCAGCGGCUGCGGCCGCCAUGGAGCCAAUGC ------------------.......--(.(((..(((((((.((((((--((..(((.........))).))))).((((((.((.((......)).)))))).)).....))).)))))))..---))))(((.(((((((....)))))..)).)))...... ( -45.20, z-score = 0.28, R) >droAna3.scaffold_13337 13575404 148 - 23293914 --------------GGACCCUGUUGCAUUUAUUCCCAGCAUAUCCUUGCUACUCACUUGAGCGAAUAGUUGUUGCCUGCCGCAUCCUGUCGCACCACCAAAGGACGCUGGCUGGCAGACUGCUG---UGCUGCUGCUGCGGCAGCUGCCGCCAUUGAUCCGAUAC --------------((.....((.(((.((((((..((((......)))).(((....))).)))))).))).)).(((.((.....)).)))))......(((((.((((.(((((.((((((---(((....)).)))))))))))))))).)).)))..... ( -52.50, z-score = -1.78, R) >droYak2.chr3L 4274432 144 + 24197627 ----------------UGCCCGCUUUAUGAGCUAAGUAUGCAU--UUAGUACUCACUUGAGCGAAUAGUUGUUGCCCGCUGCAUCCUGGCGAACGACCAGCGGUCGUUGGUUGGCGGAUUGUUG---GGCCGCUGCUGCGGCAGCUGCUGCCAUUGAACCAAUAC ----------------.((((((((..((((((((((....))--))))..))))...)))))....(((((((..((((.......))))..))).))))))).((((((((((((...((..---.(((((....))))).))..))))))....)))))).. ( -51.20, z-score = -0.37, R) >droSim1.chr3L 3261116 142 + 22553184 ----------------UGCCAGCUUAAUUUGGUAAUAA--CAU--UUAGUACUCACUUGAGCGAAUAGUUGUUGCCCGCCGCAUCCUGGCGAACGACCAGCGGUCGUUGGUUGGCGGAUUGUUG---GGCCGCUGCUGCGGCAGCUGCCGCCAUCGAGCCAAUAC ----------------.(((((((......((((((((--(((--((....(((....))).)))).)))))))))(((((.....)))))(((((((...))))))))))))))((.(((.((---(((.(((((....))))).))..))).))).))..... ( -56.30, z-score = -1.81, R) >consensus ________________AGCCCGCUAUAUUUGGUAAAAACACAUC_UUAG_ACUCACUUGAGCGAAUAGUUGUUGCCCGCCGCAUCCUGGCGCACCACCAACGGACGCUGGUUGGCCGACUGUUG___GGCCGCUGCUGCGGCAGCUGCCGCCAUGGAGCCAAUAC ....................................................((...((.((((((((((...(((.(((((..((...............))..)).))).))).))))))).....((.(((((....))))).)))))))..))........ (-24.90 = -24.13 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:21 2011