Locus 6102

Sequence ID dm3.chr3L
Location 3,710,474 – 3,710,566
Length 92
Max. P 0.655407
window8395

overview

Window 5

Location 3,710,474 – 3,710,566
Length 92
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 86.41
Shannon entropy 0.25629
G+C content 0.47285
Mean single sequence MFE -32.05
Consensus MFE -23.11
Energy contribution -24.68
Covariance contribution 1.57
Combinations/Pair 1.13
Mean z-score -1.79
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.35
SVM RNA-class probability 0.655407
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 3710474 92 + 24543557
GCGAUGUUGCAGCAACAUGUUGCGGCCGUAACUGCAAUGCAACUGCAUUGC-----UUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCAC
(((((((((((((.....)))))))).(((((.(((((((....)))))))-----..)))))((((.((((..........))))))))))))).. ( -34.00, z-score =  -1.84, R)
>droSim1.chr3L 3249618 92 + 22553184
GCGAUGUUGCAGCAACAUGUUGCGGCCGUAACUGCAAUGCAACUGCAUUGC-----UUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCAC
(((((((((((((.....)))))))).(((((.(((((((....)))))))-----..)))))((((.((((..........))))))))))))).. ( -34.00, z-score =  -1.84, R)
>droSec1.super_2 3702368 92 + 7591821
GCGAUGCUGCAGCAACAUGUUGCGGCCGUAACUGCAAUGCAACUGCAUUGC-----UUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCAC
(((((((((((((.....)))))))).(((((.(((((((....)))))))-----..)))))((((.((((..........))))))))))))).. ( -36.50, z-score =  -2.51, R)
>droYak2.chr3L 4262567 92 + 24197627
GCGAUGUUGCAGCAACAUGUUGCCGCCGUAACUGCAAUGCAACUGCAUUGC-----UUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCAC
(((((((.(((((.....))))).)).(((((.(((((((....)))))))-----..)))))((((.((((..........))))))))))))).. ( -31.00, z-score =  -1.20, R)
>droEre2.scaffold_4784 6405998 97 + 25762168
GCGAUGUUGCAGCAACAUGUUGCCGCCGUAACUGCAAUGCAACUGCAUUGCAUUGCUUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCAC
(((((((.(((((.....))))).)).(((((.(((((((((.....)))))))))..)))))((((.((((..........))))))))))))).. ( -32.30, z-score =  -0.88, R)
>droAna3.scaffold_13337 13563735 69 - 23293914
CCGAUGUUGCAGCAACAUGUUGCUGCC--------------------UCGU--------CUGCGGCUGUCAAUAGAAGCGAUUUGAAAUUGUUGCAC
..((((..(((((((....))))))).--------------------.)))--------)((((((..((((..........))))....)))))). ( -24.50, z-score =  -2.46, R)
>consensus
GCGAUGUUGCAGCAACAUGUUGCGGCCGUAACUGCAAUGCAACUGCAUUGC_____UUGUUGCAGUUGUCAAUAGAAGCGAUUUGAAACUGUUGCAC
..(((((((((((((...(((((....))))).(((((((....))))))).....)))))))))).))).......(((((........))))).. (-23.11 = -24.68 +   1.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:17 2011