| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,702,629 – 3,702,730 |
| Length | 101 |
| Max. P | 0.515031 |
| Location | 3,702,629 – 3,702,730 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.64 |
| Shannon entropy | 0.47402 |
| G+C content | 0.42283 |
| Mean single sequence MFE | -23.61 |
| Consensus MFE | -13.99 |
| Energy contribution | -13.51 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3702629 101 + 24543557 --GCCGAUUGCC--CGAUAGA-------------CGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACU-GCUUACCAAAUUUGGCCCGCAAAUUGUGUCAUAAUUUGUUAAAAGC --..(((((((.--((.....-------------))..).))))))...........((((((((.......-.........)))))))).(((((((((...)))))))))....... ( -20.29, z-score = -0.64, R) >droSim1.chr3L 3241140 101 + 22553184 --GCCGAUUGUC--CGAUAGA-------------CGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACU-GCUUACCAAAUUUGGCCCGCAAAUUGUGUCAUAAUUUGUUAAAAGC --..((((((((--((.....-------------))..))))))))...........((((((((.......-.........)))))))).(((((((((...)))))))))....... ( -24.69, z-score = -2.03, R) >droSec1.super_2 3694567 101 + 7591821 --GCCGAUUGUC--CGAUAGA-------------CGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACU-GCUUACCAAAUUUGGCCCGCAAAUUGUGUCAUAAUUUGUUAAAAGC --..((((((((--((.....-------------))..))))))))...........((((((((.......-.........)))))))).(((((((((...)))))))))....... ( -24.69, z-score = -2.03, R) >droYak2.chr3L 4254216 101 + 24197627 --GCCGAUUGGC--CGAUAGA-------------CGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACU-GCUUACCAAAUUUGGCCCGCAAAUUGUGUCAUAAUUUGUUAAAAGC --(((....)))--.((((((-------------..((((((.((.....)).....((((((((.......-.........)))))))).........))))))..))))))...... ( -23.19, z-score = -1.12, R) >droEre2.scaffold_4784 6397937 101 + 25762168 --GCCGAUUGUC--CGAUAGA-------------CGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACU-GCUUACCAAAUUUGGCCCGCAAAUUGUGUCAUAAUUUGUUAAAAGC --..((((((((--((.....-------------))..))))))))...........((((((((.......-.........)))))))).(((((((((...)))))))))....... ( -24.69, z-score = -2.03, R) >droAna3.scaffold_13337 13554226 102 - 23293914 --GCCAAUCGACAACGAUAGC-------------CGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACU-GCUUACCAAAUUUGGCCAGCAAAUUGUGUCAUAAUUUGUAAAAGC- --((..((((....)))).))-------------((((....))))..........(((((((((.......-.........)))))))))(((((((((...)))))))))......- ( -22.99, z-score = -1.64, R) >dp4.chrXR_group6 6740467 118 + 13314419 GCGACGAUCGACAACGACAACGAAGCCAGCACAGCGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACC-GCUUACCAAAUUUGGCCAACAAAUUGUGUCAUAAUUUGUAAAGAGU .....(.(((....)))).(((((....((((((((((....))))..........(((((((((.......-.........))))))))).....)))))).....)))))....... ( -24.09, z-score = -0.66, R) >droPer1.super_41 98395 118 + 728894 GCGACGAUCGACAACGACAACGAAGGCAGCACAGCGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACC-GCUUACCAAAUUUGGCCAACAAAUUGUGUCAUAAUUUGUAAAGAGU .....(.(((....)))).(((((....((((((((((....))))..........(((((((((.......-.........))))))))).....)))))).....)))))....... ( -24.09, z-score = -0.34, R) >droWil1.scaffold_180955 1569575 105 + 2875958 --CAUGUGUGUGCAUGAGUGUGU----------GUGAUAGUG--CGACAACAAACAUGGCCAAAUGUCAACUUGCUUACCAAAUUUGGUCAGCGAAUUGUGUCAUAAUUUGUAAAAAGC --(((((.(((((((...(....----------..)...)))--).)))....))))).....(((.(((.(((((.((((....)))).))))).)))...))).............. ( -22.40, z-score = 1.07, R) >droVir3.scaffold_13049 20863811 96 - 25233164 ------------AAUGAUAGCC-------CGAGUCGACAACA--CGAAAAGGAACACGG-UAAAUGUCAACU-GCUUACCAAAUUUGGCCAGCGAAUUGUGUCAUAAUUUGUUGGCAGC ------------.........(-------(...(((......--)))...)).....((-(((..(....).-..))))).......(((((((((((((...)))))))))))))... ( -23.80, z-score = -1.02, R) >droMoj3.scaffold_6680 21982722 95 - 24764193 ------------AAUGAUAGGC-------CGAGUCGACAACA--CGCGAA--AACAUUGCCAAAUGUCAACU-GCUUACCAAAUUUGGCCGGCGAAUUGUGUCAUAAUUUGUUGGCAGC ------------..((.(((((-------..(((.((((...--.((((.--....))))....)))).)))-))))).))......(((((((((((((...)))))))))))))... ( -28.00, z-score = -1.69, R) >droGri2.scaffold_15110 10462947 97 + 24565398 ------------AAUGAUAGCC-------CAAGUCGACAACA--UGAAAAAAAACACGGCUAAAUGUCAACU-GCUUACCAAAUUUGGCUAGCGAAUUGUGUCAUAAUUUGUUGGCAGC ------------..........-------...((((((((.(--(((.......((((((.....)))...(-(((..(((....)))..))))....)))))))...))))))))... ( -20.41, z-score = -0.53, R) >consensus __GCCGAUUGUCAACGAUAGA_____________CGAUGACAAUCGACAAGAAACAUGGCCAAAUGUCAACU_GCUUACCAAAUUUGGCCAGCAAAUUGUGUCAUAAUUUGUUAAAAGC .........................................................((((((((.................)))))))).(((((((((...)))))))))....... (-13.99 = -13.51 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:16 2011