| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,701,198 – 3,701,254 |
| Length | 56 |
| Max. P | 0.865952 |
| Location | 3,701,198 – 3,701,254 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 79.86 |
| Shannon entropy | 0.39018 |
| G+C content | 0.38759 |
| Mean single sequence MFE | -14.02 |
| Consensus MFE | -6.57 |
| Energy contribution | -7.72 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865952 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 3701198 56 + 24543557 GCCGAGCUAGAGAUUAAUGAUGCCACCAGUGGAUGUCAUAAUUUUU-AGCUAAUGAA ....((((((((((((.((((((((....))).)))))))))))))-))))...... ( -19.50, z-score = -5.00, R) >droSim1.chr3L 3239740 55 + 22553184 GCCGAGCUUGAGAUUAAUGAUGCCACCAGUGGAUGUCAUAAUUUU--AGCUAAUGAA ....((((.(((((((.((((((((....))).))))))))))))--))))...... ( -14.80, z-score = -2.84, R) >droSec1.super_2 3693164 55 + 7591821 GCCGAGCUUGAGAUUAAUGAUGCCACCAGUGGAUGUCAUAAUUUU--AGCUAAUGAA ....((((.(((((((.((((((((....))).))))))))))))--))))...... ( -14.80, z-score = -2.84, R) >droYak2.chr3L 4252364 55 + 24197627 GCCGAGCUGGAGAUUAAUGAUGCCACCAGUGGAUGUCAUAAUUUU--AGCUAAUGAA ....(((((.((((((.((((((((....))).))))))))))))--))))...... ( -14.80, z-score = -2.32, R) >droEre2.scaffold_4784 6396481 55 + 25762168 GCCGACGUGGAGAUUAAUGAUGCCACCAGUGGAUGUCAUAAUUUU--AGCUAAUGAA ......((.(((((((.((((((((....))).))))))))))))--.))....... ( -11.70, z-score = -1.18, R) >droMoj3.scaffold_6680 2786131 54 + 24764193 -UCAGCAUCAUAAAUUAUGA--CUGCCAUUGGGCUAUUCAAUUUGCUAAAUAAUUAA -..(((((((((...)))))--..(((....))).........)))).......... ( -8.50, z-score = -0.40, R) >consensus GCCGAGCUGGAGAUUAAUGAUGCCACCAGUGGAUGUCAUAAUUUU__AGCUAAUGAA ....((((..((((((.((((((((....))).)))))))))))...))))...... ( -6.57 = -7.72 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:15 2011