Locus 6098

Sequence ID dm3.chr3L
Location 3,678,232 – 3,678,325
Length 93
Max. P 0.770859
window8390

overview

Window 0

Location 3,678,232 – 3,678,325
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 93.76
Shannon entropy 0.10895
G+C content 0.42796
Mean single sequence MFE -21.37
Consensus MFE -20.70
Energy contribution -20.46
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.18
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.64
SVM RNA-class probability 0.770859
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 3678232 93 - 24543557
CCUCAUGGGGUUUUCAGACUCGAAGAUACACGAGCUUCCCAUCCUUUUCGGCUCAUUGUGUCCUUUUCCAUUGGAGAAUUUCAUGUAUACAUU
...((((..((((((......(((((((((.(((((.............)))))..))))).)))).......))))))..))))........ ( -23.14, z-score =  -1.56, R)
>droEre2.scaffold_4784 6372862 93 - 25762168
CCUCAUGGGGUUUUCAGAUUCAGAGAUACACGAGCUCCCCAUCCUUUUCGGCUCAUUGUGUCCUUUUCCAUUGGGGAAUUUCAUGUAUACAUU
...((((..(((..(.((...((.((((((.(((((.............)))))..))))))))..)).....)..)))..))))........ ( -22.82, z-score =  -0.72, R)
>droYak2.chr3L 4227951 93 - 24197627
CCUCAUGGGGUUUUCAGAUUCAGAGAUACACGAGUUCCCCAUCCUUUUCGCCUCAUUGUGUCCUUUUCCACUGGGGAAUUUCAUGUUUAUUUU
...((((..(((..(((....((.((((((.(((.................)))..))))))))......)))..).))..))))........ ( -18.03, z-score =   0.44, R)
>droSec1.super_2 3669881 93 - 7591821
CCUCAUGGGGUUUUCAGAUUCAAAGAUACACGAGCUCCCCAUCCUUUUCGGCUCAUUGUGUCCUUUUCCAUUCGAGAUUUUCAUGUAUACAUU
...((((..(.((((..((..(((((((((.(((((.............)))))..))))).))))...))..)))).)..))))........ ( -19.42, z-score =  -1.33, R)
>droSim1.chr3L 3216341 93 - 22553184
CCUCAUGGGGUUUUCAGAUUCAAAGAUACACGAGCUCCCCAUCCUUUUCGGCUCAUUGUGUCCUUUUCCAUUCGAGAAUUUCAUGUAUACAUU
...((((..((((((..((..(((((((((.(((((.............)))))..))))).))))...))..))))))..))))........ ( -23.42, z-score =  -2.74, R)
>consensus
CCUCAUGGGGUUUUCAGAUUCAAAGAUACACGAGCUCCCCAUCCUUUUCGGCUCAUUGUGUCCUUUUCCAUUGGAGAAUUUCAUGUAUACAUU
...((((..((((((......(((((((((.(((((.............)))))..))))).)))).......))))))..))))........ (-20.70 = -20.46 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:13 2011