| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,676,565 – 3,676,684 |
| Length | 119 |
| Max. P | 0.517404 |
| Location | 3,676,565 – 3,676,684 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.92 |
| Shannon entropy | 0.37613 |
| G+C content | 0.33325 |
| Mean single sequence MFE | -21.46 |
| Consensus MFE | -13.70 |
| Energy contribution | -13.46 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3676565 119 - 24543557 UAUAGCCGUGCAGUUAUUGAAAUGCUUGAACGGCAUUAAAAUC-GGUUUCCUACAUGAGAAAAUAUCCUUCGCUGGGCAUUAAAACUUUGAUUUAUAGCCUCUAAAGUAUGUUUUCAUAG ......((((.((..(((((((((((.....))))))....))-)))...)).)))).((((((((.(((....((((..((((.......))))..))))...))).)))))))).... ( -22.90, z-score = -0.30, R) >droEre2.scaffold_4784 6371266 120 - 25762168 CAUACCCGUAUAGUUAUGCAAAUGCUUGAACAGUAUUAAAAUCUGUUCUCUUACAUGAGAAAAUAUCCUUCGCUAGGCAUUAAAAAUUUGAUUUAUAGCCUCUAAAGUAUGUUUUCCUAG .......(((.......((....))..((((((.........))))))...)))....((((((((.(((....((((..((((.......))))..))))...))).)))))))).... ( -19.80, z-score = -1.12, R) >droYak2.chr3L 4226363 105 - 24197627 ---------------AUUGAAAUACUUGAACAGCAUUAAAAUCAAGUCUCUUACAUGAGGAAGUAUCCUUCGCUCGGCAUUAAAACUUUGAUUUAUAGCCUCUAAAGUAUGUUUUCAUGG ---------------..((((((((((.....((....(((((((((........((((((((....)))).))))........)).)))))))...)).....))))))...))))... ( -18.69, z-score = -0.73, R) >droSec1.super_2 3668199 111 - 7591821 ---------UAUACCAGUUGUAUGCCUGAACGGCAUUAAAAUUGCUUUUCCUACAUGAGAAAAUAUCCUUCGCUGGGUAUUAAAACUUUGAUUAAUAGCCUCUAAAGUAUGUUUUCAUAG ---------.....(((((..(((((.....)))))...)))))..............((((((((.(((....((.((((((........)))))).))....))).)))))))).... ( -24.10, z-score = -2.27, R) >droSim1.chr3L 3214664 100 - 22553184 --------------------UAUGCCUGAACGGCAUUAAAAUCGCUUUUCAUACAUGAGAAAAUAUCCUUCGCUGGGUAUUAAAACUUUGAUUAAUAGCCUCUAAAGUAUGUUUUCAUAG --------------------((((..((((.(((.........))).))))..)))).((((((((.(((....((.((((((........)))))).))....))).)))))))).... ( -21.80, z-score = -2.44, R) >consensus _______________AUUGAAAUGCUUGAACGGCAUUAAAAUCGCUUUUCCUACAUGAGAAAAUAUCCUUCGCUGGGCAUUAAAACUUUGAUUUAUAGCCUCUAAAGUAUGUUUUCAUAG ....................((((((.....)))))).....................((((((((.(((.((((...(((((....)))))...)))).....))).)))))))).... (-13.70 = -13.46 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:12 2011