| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,667,220 – 3,667,316 |
| Length | 96 |
| Max. P | 0.550205 |
| Location | 3,667,220 – 3,667,316 |
|---|---|
| Length | 96 |
| Sequences | 9 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 81.16 |
| Shannon entropy | 0.39727 |
| G+C content | 0.57948 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -20.08 |
| Energy contribution | -20.08 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3667220 96 + 24543557 UUGGCUAUCGACAUCGACGAGCGCUGGCGGGCAGCCUCCAGCUUCGAUUUUUGCUCUCGAGCUGC---AAGUCUUAACCACUCCUGCCAGCUUCUUCUG ...(((.(((....)))..)))(((((((((((((.((.(((..........)))...)))))))---.(((.......))).))))))))........ ( -31.10, z-score = -1.19, R) >droSim1.chr3L 3205298 96 + 22553184 UUGGCUAUCGACAUCGACGAGCGCUGGCGGGCAGCCUCCAGCUUCGAUUUUCGCUCUCGAGCUGC---AAGUCUUAACCACUCCUGCCAGCUUCUUCUG ...(((.(((....)))..)))(((((((((((((.((.((...((.....))..)).)))))))---.(((.......))).))))))))........ ( -31.10, z-score = -1.13, R) >droSec1.super_2 3653137 96 + 7591821 UUGGCUAUCGACAUCGACGAGCGCUGGCGGGCAGCCUCCAGCUUCGAUUUUCGCUCUCGAGCUGC---AAGUCUUUACCACUCCUGCCAGCUUCUUCUG ...(((.(((....)))..)))(((((((((((((.((.((...((.....))..)).)))))))---.(((.......))).))))))))........ ( -31.10, z-score = -1.17, R) >droYak2.chr3L 4216832 96 + 24197627 UUGGCUAUCGACAUCGACGAGCGCUGGCGGGCAGCCUCCAGCUUCGAUUUUUGCUCUCGAGUUGC---AAGUCUUAACCACUCCUGCCAGCUUCUUCUG ...(((.(((....)))..)))(((((((((.((......((((((((((........)))))).---))))........)))))))))))........ ( -28.74, z-score = -0.63, R) >droEre2.scaffold_4784 6361925 96 + 25762168 UUGGCUAUCGACAUCGACGAGCGCUGGCGGGCAGCCUCCAGCUUCGAUUUUUGCUCUCGAGUUGC---AAGUCUUAGCCACUCCUGCCAGCUUCUUCUG ...(((.(((....)))..)))(((((((((.((......(((..(((((..(((....)))...---)))))..)))..)))))))))))........ ( -31.20, z-score = -0.75, R) >droAna3.scaffold_13337 13517437 93 - 23293914 UUGGCUAUCGACAGAGACGAGCGCUGGCGGGCAGCCUCCAGCCUCGAUAUUUGUUCGCGAGCA-----AACUUGCAACCACUCCUGCCA-CAUCUGCUG .((((....((((((..((((.(((((.((....)).)))))))))...)))))).(((((..-----..)))))..........))))-......... ( -33.20, z-score = -1.96, R) >droWil1.scaffold_180955 1515965 89 + 2875958 UUGGCUAUCGACAUCGACGAGCGCUGGCGGCCAGCCUCCAGCUUGGGUGAGCUUAGCCAAAAU-----GAACCGCAACCACUCCUGCU--CUUCUA--- ((((((((((....))).(((.(((((...)))))))).(((((....))))))))))))...-----(((..(((........))).--.)))..--- ( -27.60, z-score = -0.58, R) >droVir3.scaffold_13049 4414647 92 + 25233164 UUGGCUAUCGACAUCGACGAGCGCUGGCGGCCAGCCUCCAGCCUCCAACCUCCAACG-GAGCCCC---AGCCGU--ACCACUCCUGCUU-CAUCUUCUG ..((((.(((....))).(((.(((((.((....)).))))))))....((((...)-)))....---))))..--.............-......... ( -26.50, z-score = -1.38, R) >droGri2.scaffold_15110 14141429 97 - 24565398 UUGGCUAUCGACAUCGACGAGCGCUGGCGGCCAGCCUCCAGCCUCCAACCUCCAGC-CGAGUCACACAACCGCUGAACCACUCCUGCUU-CAUCUUCUG ((((((.(((....))).(((.(((((.((....)).))))))))........)))-)))...........(.((((.((....)).))-)).)..... ( -26.80, z-score = -1.70, R) >consensus UUGGCUAUCGACAUCGACGAGCGCUGGCGGGCAGCCUCCAGCUUCGAUUUUCGCUCUCGAGCUGC___AAGUCUUAACCACUCCUGCCAGCUUCUUCUG ..(((..(((....)))((((.(((((.((....)).))))))))).......................................)))........... (-20.08 = -20.08 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:11 2011