| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,664,780 – 3,664,847 |
| Length | 67 |
| Max. P | 0.932298 |
| Location | 3,664,780 – 3,664,847 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 69.90 |
| Shannon entropy | 0.55693 |
| G+C content | 0.40958 |
| Mean single sequence MFE | -17.14 |
| Consensus MFE | -7.37 |
| Energy contribution | -7.23 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3664780 67 + 24543557 ------AUUUUCUUUAAAUUUUUCGGCAAAAGUUGUGCGUUAAAC-UGGUCGAAAGACCAGCAAUUGCGACUCA ------.................((((....))))((((.....(-(((((....))))))....))))..... ( -16.50, z-score = -1.75, R) >droSim1.chr3L 3202875 63 + 22553184 ------AUUUUCUUUACAUUUUUCGCCAAAAAUUGUGC----GUC-UGGUCGAAAGACCAGCGAUUGCGACUCA ------................((((...........(----(.(-(((((....))))))))...)))).... ( -17.34, z-score = -2.47, R) >droSec1.super_2 3650704 67 + 7591821 ------AUUUUCUUUAAAUUUUUCGCCAAAAAUUGUGCUUUAGUC-UGGUCGAAAGACCAGCGGUUGCGACUCA ------..........(((((((....))))))).(((....(.(-(((((....)))))))....)))..... ( -16.70, z-score = -1.95, R) >droYak2.chr3L 4214456 67 + 24197627 ------AGUUUCUUUAAAUUUUCCCCCAAAAGUUGUGCGUUUGGC-UGGUCGACAGACCAGCGAUUGCGACUCA ------........................(((((((....(.((-(((((....))))))).).))))))).. ( -18.20, z-score = -1.82, R) >droEre2.scaffold_4784 6359544 67 + 25762168 ------AUUUUCUUAAAAUUGUUCGCCCAGAGUUGUGCGUUUGGC-UGGUCGAAAGACCAGCGAUUGCGACUCA ------.......................((((((((....(.((-(((((....))))))).).)))))))). ( -25.60, z-score = -3.83, R) >dp4.chrXR_group6 6684332 67 + 13314419 AGAUAUAACAUUUCCAAGUCUUACCUUUAUGUUGGAGUCUAAAACCUAGUCCAAAGGUC-GUAAUUCC------ ......(((((....(((......))).)))))(((((.((..((((.......)))).-.)))))))------ ( -8.50, z-score = -0.12, R) >consensus ______AUUUUCUUUAAAUUUUUCGCCAAAAGUUGUGCGUUAGAC_UGGUCGAAAGACCAGCGAUUGCGACUCA ..............................((((((..........(((((....)))))))))))........ ( -7.37 = -7.23 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:10 2011