| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,664,641 – 3,664,739 |
| Length | 98 |
| Max. P | 0.754007 |
| Location | 3,664,641 – 3,664,739 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 68.53 |
| Shannon entropy | 0.48306 |
| G+C content | 0.31017 |
| Mean single sequence MFE | -17.15 |
| Consensus MFE | -10.58 |
| Energy contribution | -12.40 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3664641 98 - 24543557 AUAAUGAAAUACUCAAUUAUCAAUAUUAUAUUUUUCAAGUGGACCAAACUUGUUAAGAUCUCUUUAU---CUACAAGUAUAGGAUCUUGAAUUACGUUGGG- ...........((((((..................(((((.......)))))((((((((.((.(((---......))).)))))))))).....))))))- ( -16.60, z-score = -0.99, R) >droYak2.chr3L 4214322 100 - 24197627 AUAAUGAAAUACUUACAGAUGUACAUAUAUUUUUUCCUUUAAAU--GACUGGCUACGAUCUCUUUAUGUACAACAAGUCUGGGAUCUGAAAAUACAUUAGGG .(((((...(((........)))....(((((((((((......--((((.(.((((.........)))))....)))).))))...))))))))))))... ( -11.10, z-score = 1.21, R) >droSec1.super_2 3650577 87 - 7591821 ------------AUAACGACCUAUAUCAUUUGCUUCAAGUGGACAAAAUUUGUUAAGAUCUCUUUAU---CUACAAGUAAGAGAUCUUGAAAUACGUUAGGG ------------.(((((.......(((((((...)))))))..........((((((((((((...---........))))))))))))....)))))... ( -21.30, z-score = -2.82, R) >droSim1.chr3L 3202748 87 - 22553184 ------------AUAACGACCUAUAUCAUUUGCUUCAAGUGGACCAAAUUUGUUAAGAUCUCUUUAU---CUACAAGUAUGAGAUCUUGAAAUACGUUAGGG ------------.(((((.......(((((((...)))))))..........((((((((((..(((---......))).))))))))))....)))))... ( -19.60, z-score = -2.07, R) >consensus ____________AUAACGACCUAUAUCAUUUGCUUCAAGUGGACCAAACUUGUUAAGAUCUCUUUAU___CUACAAGUAUGAGAUCUUGAAAUACGUUAGGG ...........(((((((.................(((((.......)))))((((((((((..................))))))))))....))))))). (-10.58 = -12.40 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:09 2011