| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,648,695 – 3,648,802 |
| Length | 107 |
| Max. P | 0.871076 |
| Location | 3,648,695 – 3,648,802 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 95.16 |
| Shannon entropy | 0.08483 |
| G+C content | 0.53543 |
| Mean single sequence MFE | -35.15 |
| Consensus MFE | -30.90 |
| Energy contribution | -30.94 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3648695 107 - 24543557 GGCAUUUACCGGCAGCGUUAUUAGUGCCCC-UUUCCCAAAAAAGGAUUUCCCGUGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAA (((((.....((((((...(((((.(((((-(((......))))).......((((....))))......))).))))).....))))))........)))))..... ( -36.42, z-score = -3.25, R) >droSim1.chr3L 3186882 107 - 22553184 GGCAUUUACCGGCAGCGUUAUUAGUGCCCC-UUUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAA (((((.....((((((...(((((.(((((-(((......)))))......((((....)))).......))).))))).....))))))........)))))..... ( -38.32, z-score = -2.86, R) >droSec1.super_2 3634850 107 - 7591821 GGCAUUUACCGGCAGUGUUAUUAGUGCCCC-UUUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGAACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCUCGAA (((((.....((((((...(((((.(((((-(((......)))))..(((.((((....))))...))).))).))))).....))))))........)))))..... ( -36.32, z-score = -2.38, R) >droYak2.chr3L 4197746 108 - 24197627 GGCAUUUACCGGCGGCGUUAUUAGUGCCCCUUUUCCCAAAAAAGGAUUUCCCGGGCAUCCCCGCACGUUCGGGUCUAAUUGAAAGCUGCCCAAGCAACGUGCCUCGAA (((((.....((((((...((((((((((....(((.......)))......)))))..((((......)))).))))).....))))))........)))))..... ( -34.02, z-score = -0.82, R) >droEre2.scaffold_4784 6343445 107 - 25762168 GGCAUUUACCAGCGGCGUUAUUAGUGCCCC-UUUCCCAAAAAAGGAUUUCCCGGGGAUCUCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAACAACGUGCCACGAA (((((......(((((...(((((.(((((-(((......))))).......(.((....)).)......))).))))).....))))).........)))))..... ( -30.66, z-score = -0.92, R) >consensus GGCAUUUACCGGCAGCGUUAUUAGUGCCCC_UUUCCCAAAAAAGGAUUUCCCGGGGAUCCCCGCACGUACGGCUCUAAUUGAAAGCUGCCCAAGCAACGUGCCACGAA (((((.....((((((...(((((.(((.....(((.......))).....((((....)))).......))).))))).....))))))........)))))..... (-30.90 = -30.94 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:09 2011