| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,545,082 – 3,545,176 |
| Length | 94 |
| Max. P | 0.527558 |
| Location | 3,545,082 – 3,545,176 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 86.16 |
| Shannon entropy | 0.23672 |
| G+C content | 0.56122 |
| Mean single sequence MFE | -25.86 |
| Consensus MFE | -18.96 |
| Energy contribution | -19.36 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3545082 94 + 24543557 UGCUCGCUGUCUCUCUCUCUUAGGUUCCACAAGCCGGCUUGUU--CUCUCCGAAAGAGAGCGCUACUCUAUGGCACGAGCCGAAACACCACCCACC------- .(((((........(((((((.((....(((((....))))).--....))..))))))).((((.....)))).)))))................------- ( -25.60, z-score = -1.24, R) >droSim1.chr3L 3083407 96 + 22553184 UGCUCGCUGCCUCUCUCUCUUAGGUUCCACAAGCCGGCUUGUUUUCUCUCCGAAAGAGAGCGCUACUUUAUGGCACGAGCCGAAACACCACCCACC------- .(((((.((((.(.(((((((.((....(((((....))))).......))..))))))).).........)))))))))................------- ( -27.00, z-score = -1.79, R) >droSec1.super_2 3536731 96 + 7591821 UGCUCGCUGUCUCUCUCUCUUAGGUUCCACAAGCCGGCUUGUUUUCUCUCCGAAAGAGAGCGCUACUCUAUGGCACGAGCCGAAACACCACCCACC------- .(((((..(.((((((.((..(((....(((((....)))))....)))..)).)))))))((((.....)))).)))))................------- ( -25.70, z-score = -1.28, R) >droYak2.chr3L 4096991 90 + 24197627 -----UCUCUCUCUCUCUCUUAGGUUCCACAAGCCGGCUUGUGCUCUCCUCGCAAGAGAGCGCUACUCUAUGGCACGAGCC-AAACACCACCCACC------- -----.................((((.....))))(((((((((((((.......))))))((((.....)))))))))))-..............------- ( -26.70, z-score = -3.04, R) >droEre2.scaffold_4784 6240885 98 + 25762168 --GCAUCUCUCUCUCGCUCUUAGGUUCCACAAGCCGCCUUGUU--CUCUGCGAAAGAGAGCGCUACUCUAUGGCACGAGCC-AAACACCAGGCACCACCCACC --((..((((((.((((....(((....(((((....))))))--))..)))).)))))).)).......(((...(.(((-........))).)...))).. ( -24.30, z-score = -1.08, R) >consensus UGCUCGCUGUCUCUCUCUCUUAGGUUCCACAAGCCGGCUUGUU_UCUCUCCGAAAGAGAGCGCUACUCUAUGGCACGAGCCGAAACACCACCCACC_______ ......................((((.....))))(((((((...((((.(....))))).((((.....)))))))))))...................... (-18.96 = -19.36 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:04 2011