| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,539,165 – 3,539,233 |
| Length | 68 |
| Max. P | 0.947043 |
| Location | 3,539,165 – 3,539,233 |
|---|---|
| Length | 68 |
| Sequences | 7 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 67.36 |
| Shannon entropy | 0.60933 |
| G+C content | 0.34467 |
| Mean single sequence MFE | -11.52 |
| Consensus MFE | -6.22 |
| Energy contribution | -6.28 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3539165 68 - 24543557 ------GUUUCAUUUGCACAAA----ACUAAUUUGAGGGCACCACUCUCGAGUGGAAUUAAAUAUAUGAAAAAUAGGG ------.((((((.(((.((((----.....))))...)))(((((....)))))..........))))))....... ( -12.70, z-score = -1.57, R) >droSim1.chr3L 3077238 63 - 22553184 ------GUUUCAUUUGCACAAA----ACUAAUUUGAGGGCACCACUCUCGAGUGGAAUUAAAUAUAUGAAAAA----- ------.((((((.(((.((((----.....))))...)))(((((....)))))..........))))))..----- ( -12.70, z-score = -2.16, R) >droSec1.super_2 3530851 63 - 7591821 ------GUUUCAUUUGCACAAA----ACUAAUUUGAGGGCACCACUCUCGAGUGGAAUUAAAUAUAUGAAAAA----- ------.((((((.(((.((((----.....))))...)))(((((....)))))..........))))))..----- ( -12.70, z-score = -2.16, R) >droYak2.chr3L 4090891 68 - 24197627 ------GUUUCAUUUGCACAAA----ACUAAUUUGAGGGCAUCACUCUCGAGUGGAAUUAAAUAUAUGAAAAAUAGGG ------.((((((.........----....(((((((((.....)))))))))............))))))....... ( -12.61, z-score = -1.91, R) >droEre2.scaffold_4784 6234979 53 - 25762168 ------GUUUCAUUUGCACAAA----ACUAAUUU---------------GAGUGGAAUUAAAUAUAUGAAAAAUGGGG ------.(..(((((.......----..((((((---------------.....))))))..........)))))..) ( -4.41, z-score = 0.24, R) >droAna3.scaffold_13337 13392879 78 + 23293914 CUAUAGUUUUCGUUAAAAAAAAAAAGACUAAUUUGAGGGCAAGACUCUCGAAAGGAAUUAAUUUUAUAGAGGUUUGUG ((((((((((..((.....))..))))))).((((((((.....))))))))..............)))......... ( -11.80, z-score = -0.36, R) >droPer1.super_38 791362 65 + 801819 ------AAUCCACAAGCCGACA----AAUAGUUUU---CCCCCAGCCAGCAAUCGCAUAAUUUCCAUGGAAACUGGGG ------................----.........---.((((((...((....))....((((....)))))))))) ( -13.70, z-score = -1.30, R) >consensus ______GUUUCAUUUGCACAAA____ACUAAUUUGAGGGCACCACUCUCGAGUGGAAUUAAAUAUAUGAAAAAU_GGG .......((((((.................(((((((((.....)))))))))............))))))....... ( -6.22 = -6.28 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:04 2011