| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,529,519 – 3,529,609 |
| Length | 90 |
| Max. P | 0.664563 |
| Location | 3,529,519 – 3,529,609 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.70 |
| Shannon entropy | 0.55096 |
| G+C content | 0.38381 |
| Mean single sequence MFE | -22.47 |
| Consensus MFE | -10.10 |
| Energy contribution | -13.20 |
| Covariance contribution | 3.10 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3529519 90 + 24543557 ---------------AAGUCAAGAACUUGGCUUGAUCAAGUUUGAAGUGAAACCACAAUGAAGUUGAUACGAAUACAAAUUGUUUGGACCUCAAAUCGAGUUUGG ---------------.......(((((((..((((((((.((((..(((....)))..)))).))))..((((((.....))))))....))))..))))))).. ( -20.20, z-score = -1.08, R) >droSim1.chr3L 3067660 103 + 22553184 --AAGUCAGCUGAAGCUGACAAGAACUUGGCUUGAUCAAGUUUGAAGUGAAACCACAAUGAAGUUGAUACGAAUACAAAUUGGGUGGACAUAAAAUCGAGUUUGG --..((((((....))))))...........((((((((.((((..(((....)))..)))).))))).)))...((((((.(((.........))).)))))). ( -25.50, z-score = -2.04, R) >droSec1.super_2 3521411 103 + 7591821 --AAGUCAGCUGAAGCUGACAAGAACUUGGCUUGAUCAAGUUUGAAGUGAAACCACAAUGAAGUUGAUACGAAUACAAAUUGGGUGGACAUAAAAUCGAGUUUGG --..((((((....))))))...........((((((((.((((..(((....)))..)))).))))).)))...((((((.(((.........))).)))))). ( -25.50, z-score = -2.04, R) >droYak2.chr3L 4081035 103 + 24197627 --AAGUCAGCUGAAGCUGACAAGAACUUGGCUUGAUCAAGUUUGAAGUGAAACCACAAUGAAGCUGACACGAAUGCAAAUUGGGGGGACAUAACAUCGAGUUGGG --..((((((....)))))).....((..(((((((((....))).(((...((.((((...((..........))..)))).))...)))....))))))..)) ( -28.10, z-score = -1.98, R) >droEre2.scaffold_4784 6223924 103 + 25762168 --AAGUCAGCUGAAGCUGACAGGAACUUGGCUUGAUCAAGUUUGAAGUGAAACCACAAUGAGGUUGAUACGAACGCAAAUUGGGUGGACAUAAAAUCGAGUUUGG --..((((((....))))))..((((((((.....))))))))...(((.((((.......))))..))).....((((((.(((.........))).)))))). ( -27.20, z-score = -1.84, R) >droGri2.scaffold_15110 10267790 98 + 24565398 AAUUUCUAAAUCAGAUUUAUCUAAAUUUGA---GAUUCACUUUAUAUUCGU-CUCCGUUUCUGUUCUUAUUAGCGCAAGUCCUU---GCUUUUCAUUAAUUUUGU ..........((((((((....))))))))---..................-......................((((....))---))................ ( -8.30, z-score = 0.44, R) >consensus __AAGUCAGCUGAAGCUGACAAGAACUUGGCUUGAUCAAGUUUGAAGUGAAACCACAAUGAAGUUGAUACGAAUACAAAUUGGGUGGACAUAAAAUCGAGUUUGG ....((((((....))))))..((((((((.....))))))))...(((....)))...................((((((.(((.........))).)))))). (-10.10 = -13.20 + 3.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:01 2011