| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,529,240 – 3,529,318 |
| Length | 78 |
| Max. P | 0.988275 |
| Location | 3,529,240 – 3,529,318 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 97.18 |
| Shannon entropy | 0.05047 |
| G+C content | 0.44872 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -22.46 |
| Energy contribution | -22.58 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3529240 78 + 24543557 GGCGUAGUGGGAGAAUAUCGACUUUUACUAAGUUUUUGCUCAUUUUGCUGGCCAAUUUGCCAGCCAGUCGAGAGUCAA (((.(((((((((........)))))))))........(((..((.((((((......)))))).))..))).))).. ( -23.70, z-score = -1.93, R) >droSim1.chr3L 3067383 78 + 22553184 GGCGUAGUAGGGGAAUAUCGACUUUUACUAAGUUUUUGCUCAUUUUGCUGGCCAAUUUGCCAGCCAGUCGAGAGUCAA (((.(((((((((........)))))))))........(((..((.((((((......)))))).))..))).))).. ( -23.30, z-score = -1.84, R) >droSec1.super_2 3521135 78 + 7591821 GGCGUAGUAGGGGAAUAUCGACUUUUACUAAGUUUUUGCUCAUUUUGCUGGCCAAUUUGCCAGCCAGUCGAGAGUCAA (((.(((((((((........)))))))))........(((..((.((((((......)))))).))..))).))).. ( -23.30, z-score = -1.84, R) >droYak2.chr3L 4080759 78 + 24197627 GGCGUAGGCGAAGAAUAUCGACUUUUACUAAGUUUUUGCUCAUUUUGCUGGCCAAUUUGCCAGCCAGUCGAGAGUCAA .((....))...((...((((((.......(((....)))......((((((......)))))).))))))...)).. ( -21.20, z-score = -1.17, R) >droEre2.scaffold_4784 6223647 78 + 25762168 GGCGUAGUCGGAGAAUAUCGACUUUUACUAAGUUUUUGCUCAUUUUGCUGGCCAAUUUGCCAGCCAGUCGAGAGUCAA (((..((((((......))))))...............(((..((.((((((......)))))).))..))).))).. ( -21.50, z-score = -1.47, R) >consensus GGCGUAGUAGGAGAAUAUCGACUUUUACUAAGUUUUUGCUCAUUUUGCUGGCCAAUUUGCCAGCCAGUCGAGAGUCAA (((.(((((((((........)))))))))........(((..((.((((((......)))))).))..))).))).. (-22.46 = -22.58 + 0.12)
| Location | 3,529,240 – 3,529,318 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 97.18 |
| Shannon entropy | 0.05047 |
| G+C content | 0.44872 |
| Mean single sequence MFE | -20.50 |
| Consensus MFE | -20.30 |
| Energy contribution | -20.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3529240 78 - 24543557 UUGACUCUCGACUGGCUGGCAAAUUGGCCAGCAAAAUGAGCAAAAACUUAGUAAAAGUCGAUAUUCUCCCACUACGCC .......((((((.((((((......))))))....((((......)))).....))))))................. ( -20.30, z-score = -2.40, R) >droSim1.chr3L 3067383 78 - 22553184 UUGACUCUCGACUGGCUGGCAAAUUGGCCAGCAAAAUGAGCAAAAACUUAGUAAAAGUCGAUAUUCCCCUACUACGCC .......((((((.((((((......))))))....((((......)))).....))))))................. ( -20.30, z-score = -2.51, R) >droSec1.super_2 3521135 78 - 7591821 UUGACUCUCGACUGGCUGGCAAAUUGGCCAGCAAAAUGAGCAAAAACUUAGUAAAAGUCGAUAUUCCCCUACUACGCC .......((((((.((((((......))))))....((((......)))).....))))))................. ( -20.30, z-score = -2.51, R) >droYak2.chr3L 4080759 78 - 24197627 UUGACUCUCGACUGGCUGGCAAAUUGGCCAGCAAAAUGAGCAAAAACUUAGUAAAAGUCGAUAUUCUUCGCCUACGCC .......((((((.((((((......))))))....((((......)))).....))))))................. ( -20.30, z-score = -1.90, R) >droEre2.scaffold_4784 6223647 78 - 25762168 UUGACUCUCGACUGGCUGGCAAAUUGGCCAGCAAAAUGAGCAAAAACUUAGUAAAAGUCGAUAUUCUCCGACUACGCC (((.(((.......((((((......)))))).....))))))............(((((........)))))..... ( -21.30, z-score = -2.59, R) >consensus UUGACUCUCGACUGGCUGGCAAAUUGGCCAGCAAAAUGAGCAAAAACUUAGUAAAAGUCGAUAUUCUCCGACUACGCC .......((((((.((((((......))))))....((((......)))).....))))))................. (-20.30 = -20.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:00 2011