| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,522,822 – 3,522,892 |
| Length | 70 |
| Max. P | 0.969157 |
| Location | 3,522,822 – 3,522,892 |
|---|---|
| Length | 70 |
| Sequences | 7 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 93.37 |
| Shannon entropy | 0.12690 |
| G+C content | 0.27879 |
| Mean single sequence MFE | -15.50 |
| Consensus MFE | -14.57 |
| Energy contribution | -14.63 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3522822 70 + 24543557 -CCAAACAUUUUGCGGUAAUUUACCACAAUUUGUAAAUAUUUAAUGAACGUUAAUUAAAUGCAUAUGUACA- -....(((..(((.((((...)))).)))..)))...((((((((........))))))))..........- ( -11.50, z-score = -1.04, R) >droSim1.chr3L 3060735 71 + 22553184 CCGAAACAUUUUGCGGUAAUUUACCGCAAUUUGUAAAUAUUUAAUGAACGUUAAUUAAAUGCAAAUGUACA- .....(((..((((((((...))))))))..)))...((((((((........))))))))..........- ( -16.90, z-score = -2.67, R) >droSec1.super_2 3514540 71 + 7591821 CCAAAACAUUUUGCGGUAAUUUACCGCAAUUUGUAAAUAUUUAAUGAACGUUAAUUAAAUGCAAAUGUACA- .....(((..((((((((...))))))))..)))...((((((((........))))))))..........- ( -16.90, z-score = -2.86, R) >droYak2.chr3L 4074022 71 + 24197627 -CGAAACAUUUUGCAGUAAUUUACCGCAAGCUGUAAAUAUUUAAUGAACGUUAAUUAAAUGCAAAUGUACAA -....((((((.((....(((((((....)..))))))(((((((........))))))))))))))).... ( -12.60, z-score = -1.01, R) >droEre2.scaffold_4784 6217043 70 + 25762168 -CGAAGCAUUUUGUGGUAAUUUACCGCAAGCUGUAAAUAUUUAAUGAACGUUAAUUAAAUGCAAAUGUACA- -....(((.(((((((((...))))))))).)))...((((((((........))))))))..........- ( -14.80, z-score = -1.58, R) >dp4.chrXR_group8 5647607 71 + 9212921 CCGAAACAUUUUGCGGUAAUUUACCGCAAUUUGUAAAUAUUUAAUGAACAUUAAUUAAAUGCAAAUGUGCA- .....(((..((((((((...))))))))..)))....(((((((........)))))))(((....))).- ( -17.90, z-score = -2.78, R) >droPer1.super_38 767065 71 - 801819 CCGAAACAUUUUGCGGUAAUUUACCGCAAUUUGUAAAUAUUUAAUGAACAUUAAUUAAAUGCAAAUGUGCA- .....(((..((((((((...))))))))..)))....(((((((........)))))))(((....))).- ( -17.90, z-score = -2.78, R) >consensus CCGAAACAUUUUGCGGUAAUUUACCGCAAUUUGUAAAUAUUUAAUGAACGUUAAUUAAAUGCAAAUGUACA_ .....(((..((((((((...))))))))..)))...((((((((........))))))))........... (-14.57 = -14.63 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:59 2011