| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,510,043 – 3,510,134 |
| Length | 91 |
| Max. P | 0.715620 |
| Location | 3,510,043 – 3,510,134 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 73.07 |
| Shannon entropy | 0.51554 |
| G+C content | 0.34647 |
| Mean single sequence MFE | -19.05 |
| Consensus MFE | -10.31 |
| Energy contribution | -9.90 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3510043 91 - 24543557 ---GGAUCCCUCGAUUCGUAGUAAGCAA--UAUUAGUGGGGACUUUGCGCUUCCCAUACGAGUUGAAUUUAUGCUAAUUAUACGUUUACAUAAGUA ---.......(((((((((.(....)..--.....(((((((........))))))))))))))))(((((((.(((........)))))))))). ( -20.80, z-score = -1.04, R) >droEre2.scaffold_4784 6204235 92 - 25762168 --UGGAUCCCUUGAUUCGUAGUAAGCAA--UAUUAGUAGGGACUUUUCGCUCCCUGUGCGAGUUGAAUUUAUGCUAAUUAGACGUUUACAUAAGUA --.(((((....)))))...((((((..--.(((((((..(((..(((((.......)))))..)..))..))))))).....))))))....... ( -20.50, z-score = -0.85, R) >droYak2.chr3L 4060931 72 - 24197627 --UGGAUCCCUUGAUUCGUAGUAAGCAA--UAUUAG--------------------UACGAGUUGAAUUUAUGCUAAUUAUACGUUUACAUAAGUA --........(..(((((((.(((....--..))).--------------------)))))))..)(((((((.(((........)))))))))). ( -15.90, z-score = -2.23, R) >droSec1.super_2 3501954 91 - 7591821 ---GGAUCCCUCGUUUUGUAGUAAGCAA--UAUUAGUGGGGACUUUGCGCUCCCCAUACGAGUUGAAUUUAUGCUAAUUAUACGUUUACAUAAGUA ---......(((((.((((.....))))--.....(((((((........))))))))))))....(((((((.(((........)))))))))). ( -20.80, z-score = -1.02, R) >droSim1.chr3L 3048035 91 - 22553184 ---GGAUCCCUCGUUUUGUAGUAAGCAA--UAUUAUUGGGGACUUUGCGCUCCCCAUACGAGUUGAAUUUAUGCUAAUUAUACGUUUACAUAAGUA ---......(((((.((((.....))))--......((((((........)))))).)))))....(((((((.(((........)))))))))). ( -19.20, z-score = -0.74, R) >droVir3.scaffold_13049 20590333 92 + 25233164 AUUUGUUCAACUAGUCAGUUCGAAGCUGUUUAUUAGUAAUAGUUUUUUUGUU-UUAUAUGAGAGAAUUGUGU-CUAAUUAAACGUUUAGAAAUA-- ..................(((.((((.(((((((((..((((((((((..(.-....)..))))))))))..-)))).))))))))).)))...-- ( -17.10, z-score = -1.60, R) >consensus ___GGAUCCCUCGAUUCGUAGUAAGCAA__UAUUAGUGGGGACUUUGCGCUCCCCAUACGAGUUGAAUUUAUGCUAAUUAUACGUUUACAUAAGUA ...(((((....)))))...((((((.........(((((((........)))))))...(((.........)))........))))))....... (-10.31 = -9.90 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:57 2011