| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,504,048 – 3,504,152 |
| Length | 104 |
| Max. P | 0.500000 |
| Location | 3,504,048 – 3,504,152 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 66.47 |
| Shannon entropy | 0.45062 |
| G+C content | 0.31610 |
| Mean single sequence MFE | -21.26 |
| Consensus MFE | -10.67 |
| Energy contribution | -11.90 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 3504048 104 - 24543557 GCCUAUGAGAAAGGUACCUAAGAAUUAAAGAAAAUACCUUUC-AAGCUCACUUUUGCUACAUUUGAUGUCGAAUUGAUCUGAGAAUUAAGAAUGAUUCGAUUGAG------------- .(..(((.((((((((..................))))))))-.(((........))).)))..)..(((((((((.(((........))).)))))))))....------------- ( -20.67, z-score = -1.55, R) >droYak2.chr3L 4054726 109 - 24197627 GUGUAUGAGAAAGGUAC--------UAAAGAAAAUACUUUUUAAAGCUCACUUUCUC-AUAGAUAAACUUUAAUAGCACUGCAAAUUAAGAUCGCAAUAUGUGAAUAAUUCUAUAGAA ((.(((((((((((..(--------(..(((((....)))))..))..).)))))))-))).))..............(((..(((((...((((.....)))).)))))...))).. ( -18.10, z-score = -0.75, R) >droSim1.chr3L 3042117 104 - 22553184 GCCUAUGAGAAAGGUACCUUAGAAUUAAAGGAAAUACCUUUC-AAGCUCACUUUUGCUAAAUCUGAAGUCGAAUUUAUCUGAGAAUUAAGAGUAAUUCGAUUGAG------------- ........((((((((((((.......))))...))))))))-.(((........)))........(((((((((..(((........)))..)))))))))...------------- ( -25.00, z-score = -2.26, R) >consensus GCCUAUGAGAAAGGUACCU_AGAAUUAAAGAAAAUACCUUUC_AAGCUCACUUUUGCUAAAUAUGAAGUCGAAUUGAUCUGAGAAUUAAGAAUGAUUCGAUUGAG_____________ ((......((((((((..................))))))))...))...................((((((((((.(((........))).))))))))))................ (-10.67 = -11.90 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:56 2011