| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,500,823 – 3,500,939 |
| Length | 116 |
| Max. P | 0.558980 |
| Location | 3,500,823 – 3,500,939 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 71.00 |
| Shannon entropy | 0.55898 |
| G+C content | 0.32745 |
| Mean single sequence MFE | -19.11 |
| Consensus MFE | -8.92 |
| Energy contribution | -10.28 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3500823 116 - 24543557 AUUCCGUACAAAACUGACCAUAAAGACUUAAUUAAUACAACAUGUGCUUCAGUACAUGGAAACA-AAAUUAGCCCAACUGGCCAUACAUGUUUUAGCAAUUUAAAUUACAAACCUAC-- .....(((................................(((((((....)))))))((((((-......(((.....)))......))))))............)))........-- ( -16.50, z-score = -0.87, R) >droSim1.chr3L 3038877 116 - 22553184 AUUUCGUACAAAACUAACCAUAAAGAUUUAAUUAAUACGACAUGUGCUUCAGUACAUGGAAACA-AAAUUAGCCCAACUGGCCAUACAUGUUUUGGCAAUUUAAAUUACAAACAUAC-- .....((.((((((..............(((((.......(((((((....)))))))......-.)))))(((.....))).......))))))))....................-- ( -18.04, z-score = -0.98, R) >droSec1.super_2 3492761 116 - 7591821 AUUUCGUACAAAACUAACUAUAAAGAUUUAAUUAAUACAACAUGUGCUCCAGUACAUGGAAACA-AAAUUAGCCCAACUGGCCAUACAUGUUUUGGCAAUUUAAAUUACAAACAUAC-- .....((.((((((..............(((((.......(((((((....)))))))......-.)))))(((.....))).......))))))))....................-- ( -18.04, z-score = -1.11, R) >droYak2.chr3L 4051322 118 - 24197627 UUUCCGUACAAAACUGAACAUAACGCUUUAAUUAGUGCAACAUGAGCUCCCGAACAUGGAAACA-AAAUUAGCCAAGCUGGCCAUACAAGUUUUGGCCAUUUAAAUUACACACACAUAC (((((((........(..(((..((((......))))....)))..)........)))))))..-.............((((((.........)))))).................... ( -17.19, z-score = 0.10, R) >droEre2.scaffold_4784 6194952 116 - 25762168 AUUCCGUACAAAACUGAACAUCAAGUUUUAAUUAGAAGAACAUGUGCUCCAGUACAUGGCAACG-AAAUUAGCCAAACUGGUCAUACAUGUUUUGGCAAUUUAAAUUGCAAACAUAC-- .........((((((........)))))).......((((((((((..(((((...((((....-......)))).)))))...)))))))))).(((((....)))))........-- ( -28.30, z-score = -2.99, R) >droAna3.scaffold_13337 13353275 87 + 23293914 --------UUUAAUUAAAUUUAAGGGU---AUUAGUUGAAGAUUU--UGUGGUAAAUGGUACUAUAAAGUAUGUAUUUCGGCCAAAACUCAUUUGCUGGC------------------- --------...............((((---.((.(((((((((((--(((((((.....))))))))))).....))))))).)).))))..........------------------- ( -16.60, z-score = -1.14, R) >consensus AUUCCGUACAAAACUAAACAUAAAGAUUUAAUUAAUACAACAUGUGCUCCAGUACAUGGAAACA_AAAUUAGCCAAACUGGCCAUACAUGUUUUGGCAAUUUAAAUUACAAACAUAC__ ........((((((..........................(((((((....))))))).............(((.....))).......))))))........................ ( -8.92 = -10.28 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:55 2011