| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,262,314 – 4,262,409 |
| Length | 95 |
| Max. P | 0.838424 |
| Location | 4,262,314 – 4,262,409 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 73.97 |
| Shannon entropy | 0.47222 |
| G+C content | 0.43400 |
| Mean single sequence MFE | -21.49 |
| Consensus MFE | -12.11 |
| Energy contribution | -11.93 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4262314 95 - 23011544 GGGCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCCAGCAACAG----GACAACAAAAGCA--AUCAACUGGAU----------------- .......((.((((((.(((....))).))))))((((.....))))....(((((((......)))))))----..........)).--...........----------------- ( -19.00, z-score = -0.96, R) >droEre2.scaffold_4929 4338697 92 - 26641161 ---CCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCCAGCAACAG----GACAACAAAAGCA--AUCAACUGGAU----------------- ---....((.((((((.(((....))).))))))((((.....))))....(((((((......)))))))----..........)).--...........----------------- ( -19.00, z-score = -1.83, R) >droYak2.chr2L 4290242 92 - 22324452 ---CCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCCAGCAACAG----GACAACAAAAGCA--AUCAACUGGAU----------------- ---....((.((((((.(((....))).))))))((((.....))))....(((((((......)))))))----..........)).--...........----------------- ( -19.00, z-score = -1.83, R) >droSec1.super_5 2360405 92 - 5866729 ---CCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCCAGCAACAG----GACAACAAAAGCA--AUCAACUGGAU----------------- ---....((.((((((.(((....))).))))))((((.....))))....(((((((......)))))))----..........)).--...........----------------- ( -19.00, z-score = -1.83, R) >droSim1.chr2L 4182846 92 - 22036055 ---CCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCCAGCAACAG----GACAACAAAAGCA--AUCAACUGGAU----------------- ---....((.((((((.(((....))).))))))((((.....))))....(((((((......)))))))----..........)).--...........----------------- ( -19.00, z-score = -1.83, R) >droAna3.scaffold_12916 1476282 88 - 16180835 --GGACCACGCAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUACUGUUGUUUCCCAGCGA-------AGUGGCCGAAGGAGGACCGGUC--------------------- --.((((.((((((((.(((....))).))))).(((((((((.........)))))))))...))).-------...((((......)).))))))--------------------- ( -24.70, z-score = -1.46, R) >droVir3.scaffold_13246 342565 115 - 2672878 ---CUACGCAAAAUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUCGCAUGUCAAAAGCAGAAUCGAUGGCAACAGCGACACCAACCGGCAAACCAAUGCGACCUGGC ---...((((...((((...............((((((.....))))))...((((((.(((.....))).......((....))))))))......))))......))))....... ( -24.10, z-score = -1.05, R) >droGri2.scaffold_15252 272951 114 + 17193109 ---GUGGGCAAAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUCGCACGUCAAAAGCAGCAUCGAUAGCAGCGACACCAAC-ACAGGGAAACCACUGGGAACUGAC ---((((((((.((((.(((....))).))))((((((.....))))))..))))).)))((((...((.((.......)).))....(((..-...((....))..)))....)))) ( -28.10, z-score = -1.84, R) >consensus ___CCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCCAGCAACAG____GACAACAAAAGCA__AUCAACUGGAU_________________ .......((.((((((.(((....))).))))))..((((((((....))))))))))............................................................ (-12.11 = -11.93 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:52 2011