| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,490,025 – 3,490,076 |
| Length | 51 |
| Max. P | 0.785798 |
| Location | 3,490,025 – 3,490,076 |
|---|---|
| Length | 51 |
| Sequences | 9 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 81.37 |
| Shannon entropy | 0.38119 |
| G+C content | 0.48002 |
| Mean single sequence MFE | -15.34 |
| Consensus MFE | -9.96 |
| Energy contribution | -10.87 |
| Covariance contribution | 0.91 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3490025 51 + 24543557 CCGGUGCAACAUGGCGUAUAAGCGAUUGUAUUGUAGGCCUUGUUUAUCGGC---- ((((((.((((.(((.(((((((....)).))))).))).)))))))))).---- ( -18.70, z-score = -2.74, R) >droSim1.chrU 4671384 51 - 15797150 CCGGUGCAACACGGUGUAUAAGCGAUUGUAUUGUAGGCCUUGUUUAUCGGC---- ((((((.((((.(((.(((((((....)).))))).))).)))))))))).---- ( -17.20, z-score = -2.28, R) >droSec1.super_2 3482355 51 + 7591821 CCGGUGCAACAUGGCGUAUAAGCGAUUGUAUUGUAGGCCUUGUUUAUCGGC---- ((((((.((((.(((.(((((((....)).))))).))).)))))))))).---- ( -18.70, z-score = -2.74, R) >droYak2.chr3L 4039763 51 + 24197627 CCGGUGCAACAUGGCGUAUGAGCAAUUGUAUUGUAGGCCUUGUUUAUCGGC---- ((((((.((((.(((.((..(((....)).)..)).))).)))))))))).---- ( -18.60, z-score = -2.64, R) >droEre2.scaffold_4784 6184212 51 + 25762168 CCGGUGCAACAUGGCGUAUAAGCGAUUGUAUUGUAGGCCUUGUUUAUCGGC---- ((((((.((((.(((.(((((((....)).))))).))).)))))))))).---- ( -18.70, z-score = -2.74, R) >droAna3.scaffold_13337 13342388 51 - 23293914 CCGGUGCAACAUGGCGUAUAAGUGAUGGUAUUGUAGGCCUUGUUUAUCAGC---- ..((((.((((.(((.(((((.........))))).))).))))))))...---- ( -14.50, z-score = -1.37, R) >dp4.chrXR_group8 5604515 51 + 9212921 GUGGUGCAACAUGGCGUAUAAGUGAUUGCAUUGUAGGCCUUGUUCAUCAGC---- .(((((.((((.(((.(((((((....)).))))).))).)))))))))..---- ( -18.50, z-score = -2.61, R) >droWil1.scaffold_180955 1253968 55 + 2875958 CUUGUGCAACAUGGCGUAUAAGUGAUUGCAUUGUAGACCCAUCUUCUUCAUAUCC ((.(((((((((.........))).))))))...))................... ( -6.70, z-score = 0.87, R) >droMoj3.scaffold_6680 21691573 51 - 24764193 CCUGUGCAACGGUGCGUAUAAGUGAUUGCAUUCUCAAGCUGCUUUCCUGCC---- ...((((((...(((......))).)))))).........((......)).---- ( -6.50, z-score = 1.64, R) >consensus CCGGUGCAACAUGGCGUAUAAGCGAUUGUAUUGUAGGCCUUGUUUAUCGGC____ .(((((.((((.(((.(((((((....)).))))).))).)))))))))...... ( -9.96 = -10.87 + 0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:54 2011