| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,480,166 – 3,480,228 |
| Length | 62 |
| Max. P | 0.930301 |
| Location | 3,480,166 – 3,480,228 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 92.42 |
| Shannon entropy | 0.13494 |
| G+C content | 0.44194 |
| Mean single sequence MFE | -16.74 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.10 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930301 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3480166 62 - 24543557 UGUAUGUAUCCGGGCGCAUUUCUUAUUGUGCCUAUCUGUGUCGUGUUGAAUAUUCCGCACAA ...........(((((((........))))))).........((((.((....)).)))).. ( -15.60, z-score = -1.68, R) >droSim1.chr3L 3017713 62 - 22553184 UGUGUGUAUCCUGGCGCAUUUCUUAUUGUGCCUAUCUGUGUCGGGUUGAAUAUUCCGCACAA ............((((((........))))))....((((.((((........)))))))). ( -18.50, z-score = -2.67, R) >droSec1.super_2 3472311 62 - 7591821 UGUGUGUAUCCUGGCGCAUUUCUUAUUGUGCCUAUCUGUGUCGGGUUGAAUAUUCCGCACAA ............((((((........))))))....((((.((((........)))))))). ( -18.50, z-score = -2.67, R) >droYak2.chr3L 4029367 62 - 24197627 UGUAUGUAUCCGGGCGCAUUUCUUAUUGUGCCUAUCUGUUUCGGGUUGAAUAUUCCGAGCAA ...........(((((((........)))))))...((((.((((........)))))))). ( -17.70, z-score = -2.04, R) >droEre2.scaffold_4784 6172163 62 - 25762168 UGUGUGUAUCCGGGCACAUUGCUUAUUGUGUUUAUCUGUGUCGGGUUGAAUAUUCCGGACAA ........((((((((((........)))))..(((((...)))))........)))))... ( -13.40, z-score = -0.03, R) >consensus UGUGUGUAUCCGGGCGCAUUUCUUAUUGUGCCUAUCUGUGUCGGGUUGAAUAUUCCGCACAA ............((((((........))))))....((((.((((........)))))))). (-15.58 = -15.10 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:53 2011