| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,472,999 – 3,473,093 |
| Length | 94 |
| Max. P | 0.902888 |
| Location | 3,472,999 – 3,473,093 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 71.30 |
| Shannon entropy | 0.50844 |
| G+C content | 0.39123 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -13.64 |
| Energy contribution | -16.16 |
| Covariance contribution | 2.52 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.902888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3472999 94 - 24543557 GCGGGAGUAUCCUGAAGAUUAGGGUGAUUCGAAAAAUAAAAUU-----GUACUGAGAUUUAUUUCGAGGUACAUCCCCAGAAACUUGAAAAAAAAACUU----- (.((((.((((((((...))))))))................(-----(((((..((......))..))))))))))).....................----- ( -20.40, z-score = -1.57, R) >droSim1.chr3L 3011025 104 - 22553184 GCGGGAGUAUCCUGUAGAUUAGGGUGAUUCGAAAAAUAUUUUCGGUAAGUACUGAGAGUUAUUUCCAGGCACAGCCCCAGAAACUUAACAAAAAAACUUUACAU ..(((.((..((((.....))))(((....((((...(((((((((....)))))))))..))))....))).))))).......................... ( -22.70, z-score = -1.05, R) >droSec1.super_2 3465716 100 - 7591821 GCGGGAGUAUCCUGCAGAUUAGGGUGAUUCGAAAAAUAUUUUCGGUGAGUACUGAGAGUUAUUUCGAGGCACAGCCCCAGAA----CAAAAUAAAACUUUACAU (((((.....)))))......((((..(((((((...(((((((((....)))))))))..))))))).....)))).....----.................. ( -28.80, z-score = -3.08, R) >droYak2.chr3L 4022424 100 - 24197627 GCGGGAGUAUCCUGUAAGUUAGGGUGACUCCAAAAAUAUUUUCGGUUACUUCUGUGAUUUAUUUCGAGGCUCAUCCCCAGGGACUUAAAAAAAAGUAAAU---- ((.(((((((((((.....)))))).))))).........(((((((((....)))))......))))))...(((....))).................---- ( -22.30, z-score = -0.33, R) >droEre2.scaffold_4784 6165326 88 - 25762168 GCGGGAGUAUCGUGUAAGUUAGGGUGACUCCAAAAA-AAUUUCGGUUACUUCUGAGGUGUA-------ACAUAGCCCUA-----UUUGCAACACAUUUUGC--- ((((((......(((((((.(((((...........-.(((((((......)))))))...-------.....))))))-----)))))).....))))))--- ( -22.05, z-score = -1.16, R) >consensus GCGGGAGUAUCCUGUAGAUUAGGGUGAUUCGAAAAAUAUUUUCGGUUAGUACUGAGAUUUAUUUCGAGGCACAGCCCCAGAAACUUAAAAAAAAAACUUU____ ..(((..(((((((.....))))))).(((((((...((((((((......))))))))..))))))).......))).......................... (-13.64 = -16.16 + 2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:52 2011