| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,467,971 – 3,468,031 |
| Length | 60 |
| Max. P | 0.771550 |
| Location | 3,467,971 – 3,468,031 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 75.08 |
| Shannon entropy | 0.42919 |
| G+C content | 0.34823 |
| Mean single sequence MFE | -9.43 |
| Consensus MFE | -7.31 |
| Energy contribution | -7.37 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3467971 60 - 24543557 ----------UUAAAGCAUAACAUCACGAUUAUUAUAUGGGU-GAGGUUCAACUCAAUUGAACAAGACCAU ----------.............................(((-...((((((.....))))))...))).. ( -8.60, z-score = -0.95, R) >droAna3.scaffold_13337 13322139 71 + 23293914 UAAAGAUCUAUAUACGCUUUGAACUUUUCACUCUAUACGGCUGGGGGUUCAACGCAGUUGAACUGGCGCUC ..............((((............(((((......)))))(((((((...))))))).))))... ( -13.60, z-score = -0.52, R) >droEre2.scaffold_4784 6160204 59 - 25762168 -----------UAAAGCAUAACAUCACGAUUAUUAUAUGGGU-GAGGUUCAACUCAAUUGAACAAUACCAU -----------............................(((-(..((((((.....))))))..)))).. ( -10.20, z-score = -1.88, R) >droYak2.chr3L 4017214 60 - 24197627 ----------UUAACGCAUAACAUAACGAUUAUAAUAUGGGU-GAGGUUCAACUCAAUUGAACAAGACCAU ----------......((((..(((.....)))..))))(((-...((((((.....))))))...))).. ( -8.90, z-score = -1.35, R) >droSec1.super_2 3460602 60 - 7591821 ----------UUAAAGCAUAACAUCACGAAUUUAAUAUGGGU-GAGGUUCAACUCAAUUGAACAAGACCAU ----------.............................(((-...((((((.....))))))...))).. ( -8.60, z-score = -1.04, R) >droSim1.chr3L 3005936 60 - 22553184 ----------UUAAAGCAUAACAUCACGUAUUUAAUAUGGGU-GAGAUUCAACUCAAUUGAACAAGACCAU ----------.............((((.(((.....))).))-))..(((((.....)))))......... ( -6.70, z-score = -0.34, R) >consensus __________UUAAAGCAUAACAUCACGAAUAUAAUAUGGGU_GAGGUUCAACUCAAUUGAACAAGACCAU .......................................(((....((((((.....))))))...))).. ( -7.31 = -7.37 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:51 2011