| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,467,769 – 3,467,874 |
| Length | 105 |
| Max. P | 0.781149 |
| Location | 3,467,769 – 3,467,874 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 69.69 |
| Shannon entropy | 0.55616 |
| G+C content | 0.49606 |
| Mean single sequence MFE | -21.25 |
| Consensus MFE | -9.30 |
| Energy contribution | -9.97 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3467769 105 + 24543557 ---------CCACAUUCAUCGACUUUCCUUCCCAAAGAGCAAACGAAUUUGAAGCGAUCGCGCUUUGAAGACGAUACCGAAAACC---AGCACCCAUUGAAACACGCCAAAGUGGAG ---------((((.....(((.((((.......))))......((..((..(((((....)))))..))..))....))).....---........(((........))).)))).. ( -18.80, z-score = -1.18, R) >droAna3.scaffold_13337 13321909 117 - 23293914 ACGAACACCCUCCUUCCCACGAGCCCGCCCGACGAGCCACAGAAAACUCUUAAGCGCCGCCACAAUCUCAUUAAUGUGGAGAGCCAUUCUCGUCCUCCUAAGAAGCACAAGCUCGAA ...................(((((..((..(((((((...(((....)))...))(((.(((((..........))))).).)).....))))).((....)).))....))))).. ( -22.80, z-score = -0.88, R) >droEre2.scaffold_4784 6160000 105 + 25762168 ---------CCACAUUCCACUAAUUUCCUUCCCAAGGAGCAAACCCAUUUGAAGCGGCCGCGCUUUGAAGACGACCCUGAAAACC---UCCACCCAUUGAAACACGCCAAAGUGGAA ---------.....(((((((...(((((.....)))))........((..(((((....)))))..))................---......................))))))) ( -21.00, z-score = -1.37, R) >droYak2.chr3L 4017009 105 + 24197627 ---------CCACAUUCCACCACUUUACUUCCCAAAGAGCAAACAAAGUUGAAGCGGCCGCGCUUUGAAGACGAUUCUGAAAACC---UCCACCCAUUGAAACACGCCAAAGUGGAA ---------..........(((((((.(((....))).((........(..(((((....)))))..)...((((..((......---..))...))))......)).))))))).. ( -17.70, z-score = -0.41, R) >droSec1.super_2 3460395 108 + 7591821 ------CCACGACAUUCAUCGACUUUGCUUCCCAAAGAGCACAUCAAUUUGAAGCGCCCGCGCUUUGAAGACGAUUCCGAAAACC---UUCACCCAUUGAAACACGCCAAAGUCGUG ------.((((((.....(((....(((((......))))).(((..((..(((((....)))))..))...)))..))).....---((((.....))))..........)))))) ( -26.30, z-score = -3.36, R) >droSim1.chr3L 3005738 108 + 22553184 ------CCACCACAUUCAUCGACUUUGCUUCCCAAAGAGCACAUCAAUUUGAAGCGCCCUCGCUUUGAAGACGAUUCCGAAAACC---UUCACCCAUUGAAACACGCCAAAGUCGUG ------.............(((((((((((......))))...((((((..(((((....)))))..)).........(((....---))).....))))........))))))).. ( -20.90, z-score = -2.35, R) >consensus _________CCACAUUCAACGACUUUGCUUCCCAAAGAGCAAACCAAUUUGAAGCGCCCGCGCUUUGAAGACGAUUCCGAAAACC___UUCACCCAUUGAAACACGCCAAAGUCGAA ...................(((((((.....................((..(((((....)))))..))..((....)).............................))))))).. ( -9.30 = -9.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:50 2011