| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,451,026 – 3,451,138 |
| Length | 112 |
| Max. P | 0.827347 |
| Location | 3,451,026 – 3,451,138 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.01 |
| Shannon entropy | 0.31803 |
| G+C content | 0.53204 |
| Mean single sequence MFE | -23.01 |
| Consensus MFE | -17.22 |
| Energy contribution | -18.18 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3451026 112 + 24543557 UUUUCUUUGGGGUCGCAUUCAAACAACCCCUUGCAACCCUACGCCUCCUCCAUCUACAAUACAUCGAGCCAUUCAUGAAUGGACCCCCGAGAAGACGUCACGCCACCCGAUC (((((((.((((((.((((((...........((........))...(((...............))).......)))))))))))).)))))))................. ( -25.36, z-score = -2.19, R) >droYak2.chr3L 3999688 89 + 24197627 UUUUCUUCGGGGUCGCAUCUUA----CCCCUUCGAACCCUGCUCC-----------------AUCGAGCUAUUCAUGAAUGGACCCCCG--AAGACGUCACGCUAUCCGAUU ...(((((((((((.(((....----.....(((......((((.-----------------...))))......)))))))).)))))--))))................. ( -22.30, z-score = -1.26, R) >droEre2.scaffold_4784 6142989 92 + 25762168 UUUUCUUCGGGGUCGCAUUUAA----CCCCUUCGAACCCUCCUCCUCC--------------AUCGAGCCAUUCAUGAAUGGACCCCCG--AAGACGUCACGCUAUCCGAUU ...(((((((((((.((((((.----....(((((.............--------------.))))).......)))))))).)))))--))))................. ( -23.14, z-score = -1.70, R) >droSec1.super_2 3443621 110 + 7591821 UUUUCUUUGGGGUCGCAUUCAAACAACCCCUUCCAACCCUACUCCUCCUCAUCCUCC--UCCAUCGAACCAUUCAUGAAUGGACCCCCGAGAAGACGUCACGCCACCCGAUC (((((((.((((((.((((((....................................--................)))))))))))).)))))))................. ( -22.12, z-score = -1.57, R) >droSim1.chr3L 2989398 110 + 22553184 UUUUCUUUGGGGUCGCAUUCAAACAACCCCUUCCAACCCUACUCCUCCUCAUCCUCC--UCCAUCGAACCAUUCAUGAAUGGACCCCCGAGAAGACGUCACGCCACCCGAUC (((((((.((((((.((((((....................................--................)))))))))))).)))))))................. ( -22.12, z-score = -1.57, R) >consensus UUUUCUUUGGGGUCGCAUUCAAACAACCCCUUCCAACCCUACUCCUCCUC___CU_C__U_CAUCGAGCCAUUCAUGAAUGGACCCCCGAGAAGACGUCACGCCACCCGAUC (((((((.((((((.((((((......................................................)))))))))))).)))))))................. (-17.22 = -18.18 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:46 2011