| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,259,652 – 4,259,767 |
| Length | 115 |
| Max. P | 0.559725 |
| Location | 4,259,652 – 4,259,767 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.06 |
| Shannon entropy | 0.36256 |
| G+C content | 0.40691 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -14.33 |
| Energy contribution | -15.55 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4259652 115 - 23011544 AACCCUUUAUGCAAUCUGCAUACAGG--CG-AACAGAUUUCUUUGUGCGAGAAUUGAUUGCAUAUUACGUAUACGUAAUGCGGCAAAAGCGCCAUUUCUGCCAUUCCUGUUUUUUCUU- ...(((.(((((.....))))).)))--.(-(((((........((((((.......))))))((((((....))))))..(((((((......))).))))....))))))......- ( -28.60, z-score = -1.76, R) >droEre2.scaffold_4929 4335977 112 - 26641161 AACCCUUUAUGCAAUCUGCAUACAAG--CG-AACAGAUUUCUUUGUGCGAGAAUUGAUUGCAUAUUACGUAUACGUAAUGCCGCAAAAGCGCCAUUUCUGCUCUCGUCCUUUUUU---- ..(.((((((((.....))))).)))--.)-.(((((....)))))((((((.....((((.(((((((....)))))))..))))..(((.......)))))))))........---- ( -24.30, z-score = -1.34, R) >droYak2.chr2L 4287490 107 - 22324452 AACCGUUUAUGCAAUCUGCAUACAAG--CG-AACAGAUUUCUUUGUGCGAGAAUUGAUUGCAUAUUACGUAUACGUAAUGCCGCAAAAGCGCCCCAUUUCCUUUUUAUUU--------- ...(((((.(((....((((..(((.--((-.(((((....))))).))....)))..))))(((((((....)))))))..))).)))))...................--------- ( -23.00, z-score = -1.72, R) >droSec1.super_5 2357763 115 - 5866729 AACCCUUUAUGCAAUCUGCAUACAGG--CG-AACAGAUUUCUUUGUGCGAGAAUUGAUUGCAUAUUACGUAUACGUAAUGUCGCAAAAGCGCCAUUUCUGCCAUUUCUGUUUUUUUUU- ...(((.(((((.....))))).)))--.(-((((((......((.((.((((.((.((((((((((((....)))))))).))))......)).))))))))..)))))))......- ( -30.60, z-score = -2.99, R) >droSim1.chr2L 4180160 115 - 22036055 AACCCUUUAUGCAAUCUGCAUACAGG--CG-AACAGAUUUCUUUGUGCGAGAAUUGAUUGCAUAUUACGUAUACGUAAUGCCGCAAAAGCGCCAUUUCUGCCAUUUCUGUUAUUUUUU- ..((((.(((((.....))))).)))--.)-((((((......((.((.((((.((...((((..((((....))))))))(((....))).)).))))))))..)))))).......- ( -29.50, z-score = -2.57, R) >dp4.chr4_group2 250553 114 - 1235136 AUCCCUUCAUACAAUCUGCAUACAGAGCCGCCACAGAUUUCUUUGUGCGGAAAUUGAUUGCAUAUUACGUAUAC-----GCCGCAAAAAUACGCCACGCACCCGCACCCGCACCUGCAC ............(((.((((..(((..((((.(((((....)))))))))...)))..)))).))).(((((..-----.........)))))....(((...((....))...))).. ( -21.40, z-score = -0.50, R) >consensus AACCCUUUAUGCAAUCUGCAUACAGG__CG_AACAGAUUUCUUUGUGCGAGAAUUGAUUGCAUAUUACGUAUACGUAAUGCCGCAAAAGCGCCAUUUCUGCCAUUUCUGUUUUUU_UU_ ........((((((((((((((.(((..(......)...))).))))))......))))))))((((((....))))))...((....))............................. (-14.33 = -15.55 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:51 2011