| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,440,213 – 3,440,263 |
| Length | 50 |
| Max. P | 0.539472 |
| Location | 3,440,213 – 3,440,263 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.16929 |
| G+C content | 0.51200 |
| Mean single sequence MFE | -12.76 |
| Consensus MFE | -12.26 |
| Energy contribution | -11.62 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3440213 50 + 24543557 CCACAGUCUGUCUUCCCGGCUUUAAAGGCCGUCUUUAGGAGGCGAACAGU .....((.(((((((.(((((.....)))))......))))))).))... ( -14.20, z-score = -1.04, R) >droSim1.chr3L 2977782 50 + 22553184 CCACAGUCUGUCUUCCCGGCUUUAAAGGCUGUCUUUAGGAGGCGAACAGA ......(((((((((((((((.....)))))......)))))...))))) ( -12.80, z-score = -0.14, R) >droSec1.super_2 3432316 50 + 7591821 CCACAGUCUGUCUUCCCGGCUUUAAAGGCCGUCUUUAGGUGGCGAACAGA ......((((((.....((((.....))))(((.......)))).))))) ( -11.90, z-score = 0.03, R) >droYak2.chr3L 3988165 50 + 24197627 CCACAGACUGUCUCUCCGGUUUUAAAGACCGUCUUUAGGAGGCAAACAGA ........(((((((.(((((.....)))))......)))))))...... ( -11.90, z-score = -0.68, R) >droEre2.scaffold_4784 6130185 50 + 25762168 CCACAGUCUGUCUCUCCGGUUUUAAAGACCGUCUUUAGCAGGCAAACAGA .....((((((.....(((((.....)))))......))))))....... ( -13.00, z-score = -2.14, R) >consensus CCACAGUCUGUCUUCCCGGCUUUAAAGGCCGUCUUUAGGAGGCGAACAGA .....((.(((((((.(((((.....)))))......))))))).))... (-12.26 = -11.62 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:43 2011