| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,431,572 – 3,431,663 |
| Length | 91 |
| Max. P | 0.617690 |
| Location | 3,431,572 – 3,431,663 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 59.16 |
| Shannon entropy | 0.75100 |
| G+C content | 0.56004 |
| Mean single sequence MFE | -27.26 |
| Consensus MFE | -11.74 |
| Energy contribution | -13.90 |
| Covariance contribution | 2.16 |
| Combinations/Pair | 1.52 |
| Mean z-score | -0.65 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3431572 91 - 24543557 UGCC-AAAGUUGUCAAUUGCACCUGGAUUGGGUGGAUGGUCCGUUUGUCCGAUGGCCAGGUGCAGGCCCACUUCGCCU--UCACCGCUUCUCCA ....-.((((.((....(((((((((((((((..((((...))))..))))))..)))))))))(((.......))).--..)).))))..... ( -32.20, z-score = -0.79, R) >droSim1.chr3L 2969198 91 - 22553184 UGCC-AAAGUUGUCAAUUGCACCUGGAUUGGGUGGAUGGUCCGUUUGUCCGAUGGCCAGGUGCAGGCCCACUUCGCCU--UCACCUCUGCGCCA .(((-(.((.((.....(((((((((((((((..((((...))))..))))))..)))))))))(((.......))).--.)).)).)).)).. ( -33.70, z-score = -0.80, R) >droSec1.super_2 3423657 91 - 7591821 UGCC-AAAGUUGUCAAUUGCACUUGGAUUGGGUGGAUGGUCCGUUUGUCCGAUGGCCAGGUGCAGGCCCACUUCGCCU--UCACCUCUGCUCCA ..((-((.((.((.....))))))))..((((..(((((.(((((.....))))))))((((.((((.......))))--.))))))..).))) ( -29.50, z-score = -0.01, R) >droWil1.scaffold_180955 1177727 84 - 2875958 UGCCAAAAGCUGUCAAUUGCUAAUAGUUUGGCGUUAGAAUCUGC---UGUAGUAGAUAGA-------CCACUUUGUCUACCUGCCCCUGCCCCA .(((((((((........))).....))))))..........((---.(..((((.((((-------(......))))).))))..).)).... ( -20.90, z-score = -2.03, R) >droVir3.scaffold_13049 18256712 74 + 25233164 -GCUGAG---UGGCAACUGUACCCAGCACCUGUACCCGGCACCUGUACUUGGCA-CCAGGUGCAAAUCCCCCUGCCCCU--------------- -((((.(---((.(....)))).))))..........((((..((((((((...-.))))))))........))))...--------------- ( -20.00, z-score = 0.37, R) >consensus UGCC_AAAGUUGUCAAUUGCACCUGGAUUGGGUGGAUGGUCCGUUUGUCCGAUGGCCAGGUGCAGGCCCACUUCGCCU__UCACCUCUGCUCCA ...........((...((((((((((.(((((..((((...))))..)))))...))))))))))....))....................... (-11.74 = -13.90 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:42 2011