| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,430,696 – 3,430,795 |
| Length | 99 |
| Max. P | 0.757755 |
| Location | 3,430,696 – 3,430,795 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 64.95 |
| Shannon entropy | 0.58739 |
| G+C content | 0.50223 |
| Mean single sequence MFE | -26.46 |
| Consensus MFE | -11.76 |
| Energy contribution | -13.88 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.757755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3430696 99 + 24543557 ------------------AACGGGUCACUCCCCCCGUAGAACGACCCUGCAUGCUUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCAGCUUCUU ------------------.(((((........)))))(((((((((.((.((((........))))))...))))((((((((............)))))))).......).)))). ( -25.50, z-score = -2.57, R) >droSim1.chr3L 2968337 97 + 22553184 ------------------AAGGGGUCACUCCUCCCGUGGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCAGGUUC-- ------------------..((((((..(((......)))..))))))((.(((....))).))......(((..((((((((............))))))))))).........-- ( -27.10, z-score = -1.06, R) >droSec1.super_2 3422812 97 + 7591821 ------------------AAGGGGUCACUCCUCCCGUGGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCAGGUUC-- ------------------..((((((..(((......)))..))))))((.(((....))).))......(((..((((((((............))))))))))).........-- ( -27.10, z-score = -1.06, R) >droYak2.chr3L 3978809 81 + 24197627 -------------------------------GGCGGCUAUAAGUAUGUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCCUUCAUGGCUC---CCAGGUUC-- -------------------------------((.((((....((((((((........)))))))).....))))((((((((............)))))))).---))......-- ( -21.90, z-score = -1.02, R) >droWil1.scaffold_180955 1176751 108 + 2875958 AGCAAGUGCAAUUGCCGUGGAAGGUAACAAGUGACGUCAGAGUGGAAAAAAGGGACUUUGUCGAUCCAACAGGUCAGCCAUGACAUAAUACUCUUUCAUGGCUCUCAC--------- .((....))....(((((((((((((....(.((((.((((((...........)))))).)).))).....((((....))))....))).))))))))))......--------- ( -30.70, z-score = -1.34, R) >consensus __________________AAGGGGUCACUCCUCCCGUGGAACGACCCUGCAUGCAUAAGUACGUAUCAUCAGGUCAGCCAUGACAUAAUACCCUUUCAUGGCUCCUCCCAGGUUC__ .....................(((((..(((......)))..)))))(((.(((....))).)))......((..((((((((............))))))))....))........ (-11.76 = -13.88 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:41 2011