| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,420,738 – 3,420,829 |
| Length | 91 |
| Max. P | 0.556099 |
| Location | 3,420,738 – 3,420,829 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 75.93 |
| Shannon entropy | 0.45441 |
| G+C content | 0.40160 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -12.44 |
| Energy contribution | -13.59 |
| Covariance contribution | 1.15 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3420738 91 - 24543557 AGUCUCAAAAGUCUGGUCGAAAAAAU-UGCCAUAUACGGUGUAUUUUUUCCGUAUUGUAACGCUGAUUUAUGGCGACGACUCGUCUGCGGCG---- .(((.....((.(.(((((......(-(((((((..((((((((..(......)..)).))))))...))))))))))))).).))..))).---- ( -23.20, z-score = -1.04, R) >droSim1.chr3L 2958111 91 - 22553184 AGUGUCAAAAGUCUGGUCGAAAAAAU-UGCCAUAUACGGUGUAUUUUUUCCGUAUUGUAACGCUGAUUUAUGGCGACGACUCGUCUGCGGCG---- ...(((...((.(.(((((......(-(((((((..((((((((..(......)..)).))))))...))))))))))))).).))..))).---- ( -24.40, z-score = -1.18, R) >droSec1.super_2 3413137 72 - 7591821 -------------------AAAAAAU-UGCCAUAUACGGUGUAUUUUUUCCGUAUUGUAACGCUGAUUUAUGGCGACGACUCGUCUGCGGCG---- -------------------......(-(((...((((((..........)))))).))))(((((......(((((....)))))..)))))---- ( -18.00, z-score = -1.03, R) >droYak2.chr3L 3968658 91 - 24197627 AGUCUAAAAAGUCUGUUCGAAGAAAU-UGCCAUAUACGGUGUAUUUUUUCAGCAUUGUAACGCUGAUUUAUGGCGACGACUCGUCUGCGACG---- .(((....(((((.....((((((((-((((......)))).))))))))(((........))))))))...((((((...)))).))))).---- ( -21.90, z-score = -0.66, R) >droEre2.scaffold_4784 6110758 91 - 25762168 AGUCUAAAAAGUCUGGUCGAAAAAAU-UGCCAUAUACGGUGUAUUUUUUCAGUAUUGUUACGCUGAUUUAUGGCGACGACUCGUCUGCGGCG---- .(((.....((.(.(((((......(-(((((((..(((((((...............)))))))...))))))))))))).).))..))).---- ( -25.16, z-score = -1.93, R) >droPer1.super_38 635729 85 + 801819 -----AAAAAUUCAGAAUAAAAAAACACCUUAUAUGGGGUAUA--UUUUUUUUGUUUU----CUGAUUUAUGGCGACGAAUCGUCUGCGGCGGUAA -----......((((((((((((((.(((((....)))))...--.)))))))))..)----)))).((((.((((((...))))....)).)))) ( -17.00, z-score = -1.11, R) >dp4.chrXR_group8 5522709 92 - 9212921 AGUCGAAAAAUUCAGAAUAAAAAAACACCUUAUAUGGGGUAUAUUUUUUUUUUGUUUU----CUGAUUUAUGGCGACGAAUCGUCUGCGGCGGUAA .((((......((((((((((((((.(((((....)))))......)))))))))..)----)))).......))))..(((((.....))))).. ( -21.02, z-score = -1.66, R) >consensus AGUCUAAAAAGUCUGGUCGAAAAAAU_UGCCAUAUACGGUGUAUUUUUUCCGUAUUGUAACGCUGAUUUAUGGCGACGACUCGUCUGCGGCG____ ..................((((((((.((((......)))).))))))))..........(((((......(((((....)))))..))))).... (-12.44 = -13.59 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:39 2011