| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,410,698 – 3,410,797 |
| Length | 99 |
| Max. P | 0.685123 |
| Location | 3,410,698 – 3,410,797 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 73.11 |
| Shannon entropy | 0.37359 |
| G+C content | 0.44183 |
| Mean single sequence MFE | -27.24 |
| Consensus MFE | -12.87 |
| Energy contribution | -12.77 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3410698 99 - 24543557 GUCUCUGGCUGCGUGGGAAAAUGGAAAAGAUCUCUAUUUGGUGACUUCUUCUUCU---UUACAUUUCCAUGCACUCUU-GGUUUAGAUCUGCCAAACUAGAGG ..((((((.((((((((((...((((((((..((........))..)))).))))---.....))))))))))...((-(((........))))).)))))). ( -30.60, z-score = -3.19, R) >droEre2.scaffold_4784 6100818 83 - 25762168 GUCUCU-AUUGCGUGGGAAAAUUUCUAAGAUCUCUAGGUGA-----------------CUGCAUUUCCAUGUACUCCCCGG-UUAGAACUGCC-AGCUAGAGG ..((((-(.((((((((((........((....))((....-----------------))...))))))))))......((-(.......)))-...))))). ( -20.60, z-score = -0.44, R) >droSec1.super_2 3403277 102 - 7591821 GUCUCU-GCUGCGUGGGAAAAUGGAAAAGAUCUCUUGGUGACUUCUUCUUCUUCUUCGUUACAUUUCCAUGCACUCUUGGGUUUAGAUCUGCUAAACUAGAGG ......-..((((((((((((((((.((((......(....).......)))).))))))...))))))))))((((..(((((((.....))))))))))). ( -30.52, z-score = -3.07, R) >consensus GUCUCU_GCUGCGUGGGAAAAUGGAAAAGAUCUCUAGGUGA___CUUCUUCUUCU___UUACAUUUCCAUGCACUCUU_GGUUUAGAUCUGCCAAACUAGAGG ..((((...((((((((((............................................))))))))))......(((........))).....)))). (-12.87 = -12.77 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:38 2011