| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,259,010 – 4,259,120 |
| Length | 110 |
| Max. P | 0.706761 |
| Location | 4,259,010 – 4,259,120 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.99 |
| Shannon entropy | 0.34176 |
| G+C content | 0.60579 |
| Mean single sequence MFE | -35.27 |
| Consensus MFE | -28.61 |
| Energy contribution | -28.93 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.706761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4259010 110 - 23011544 GGUUUUGAAACUCUGCGGUUGACUGGCUUGCCGGAUGAACUGCGGCCACCAGUUGGUGACCCCGACGGAUCAGAGCCACCCACUCAGCCAAACUCACACCUGGCCAAACA ((((((((....((((((((.(((((....)))).).))))))))...((.(((((.....))))))).)))))))).........((((..........))))...... ( -37.80, z-score = -1.55, R) >droSim1.chr2L 4179549 99 - 22036055 GGGUUUGAAACUCUGCGGUUGACUGGCUUGCCGGAUGAACUGCGGCCACCAGUUGGUGACCCCGACGGAUCAGAGCCACCCAC---ACCCAAGCCCCACACA-------- (((((((.......((((((.(((((....)))).).))))))(((((((....)))).((.....))......)))......---...)))))))......-------- ( -34.90, z-score = -1.11, R) >droSec1.super_5 2357153 99 - 5866729 GGGUUUGAAACUCUGCGGUUGACUGGCUUGCCGGAUGAACUGCGGCCACCAGUUGGUGACCCCGACGGAUCAGAGCCACCCAC---AUCCAACCCCUACACA-------- (((((.((......((((((.(((((....)))).).))))))(((((((....)))).((.....))......)))......---.)).))))).......-------- ( -32.40, z-score = -0.88, R) >droEre2.scaffold_4929 4335401 89 - 26641161 GGGUUUGAAACUCUGCGGUUGGCUGGCCGGGCGACUGAACUGCGGUCACCAGUUGGUGACCCCGACGGAUCAGAGCCACCACCCACACA--------------------- ((((......((((((.((((((.(..(((....)))..).))(((((((....))))))).)))).)..))))).....)))).....--------------------- ( -36.00, z-score = -1.11, R) >consensus GGGUUUGAAACUCUGCGGUUGACUGGCUUGCCGGAUGAACUGCGGCCACCAGUUGGUGACCCCGACGGAUCAGAGCCACCCAC___ACCCAACCCCCACACA________ ((.(((((....((((((((.(((((....)))).).))))))))...((.(((((.....))))))).))))).))................................. (-28.61 = -28.93 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:50 2011