| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,395,979 – 3,396,090 |
| Length | 111 |
| Max. P | 0.722384 |
| Location | 3,395,979 – 3,396,090 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 78.99 |
| Shannon entropy | 0.38081 |
| G+C content | 0.51018 |
| Mean single sequence MFE | -35.27 |
| Consensus MFE | -19.84 |
| Energy contribution | -20.78 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3395979 111 + 24543557 GGGUCUCAUGUGGCAAGGGGGGGGGCGAGCAUGGGUUAAGCCAAGCCAAGGGGGCAUAUUCAAAAUCAUAACAGAAAA-UGAUGGAUGAAUUGUCGCGCUGCUUGGCUCCAA ((..(((((((.((..........))..)))))))...((((((((..(((.((((.(((((..(((((........)-))))...))))))))).).)))))))))))).. ( -36.50, z-score = -1.48, R) >droSim1.chr3L 2931633 108 + 22553184 GGGCCGCAUGUGGCAAGGGGGG---CAAGCAUGGGUUAAGCCAAGCCAAGGGGGCAUAUUCAAAAUCAUAACAGAAAA-UGAUGGAUGAAUUGUCGCGCUGCUUGGCUCCAA ..((((....))))...((((.---((((((..((((......))))...(.((((.(((((..(((((........)-))))...))))))))).)..)))))).)))).. ( -37.90, z-score = -1.55, R) >droSec1.super_2 3388401 108 + 7591821 GGGUCGCAUGUGGCAAGGGGGG---CAAGCAUGGGUUAAGCCCAGCCAAGGGGGCAUAUUCAAAAUCAUAACAGAAUA-UGAUGGAUGAAUUGUCGCGCUGCUUGGCUCCAA ..((((....))))...((((.---((((((((((.....))))......(.((((.(((((..((((((......))-))))...))))))))).)..)))))).)))).. ( -39.20, z-score = -1.93, R) >droYak2.chr3L 3943122 100 + 24197627 -------GGGUCUCAUGGGGG----CGACCAUGGGUUAAGCCAAGCCAAGGGGGCAUAUUCAAAAUCAUAACAGAAAA-UGAUGGAUGAAUUGUCGCGCUGCUUGGCUCCAA -------((..(((((((...----...)))))))...((((((((..(((.((((.(((((..(((((........)-))))...))))))))).).)))))))))))).. ( -37.60, z-score = -2.89, R) >droEre2.scaffold_4784 6086213 93 + 25762168 --------------AAGGGGG----CGACCAUGGGUUAAGCCAAGCCAAGGGGGCAUAUUCAAAAUCAUAACAGAAAA-UGAUGGAUGAAUUGUCGCGCUGCUUGGCUCCAA --------------..((((.----...))........((((((((..(((.((((.(((((..(((((........)-))))...))))))))).).)))))))))))).. ( -31.20, z-score = -2.02, R) >dp4.chrXR_group8 5490921 85 + 9212921 -------------------------UGGGCCCCCAC--AGAAGGGGGGGGGCAGCACAUUCAAAAUCAUAACUGAAAAAUGAUGGAUGAAUUGUCGCGCUGCUUGGCUCCAA -------------------------(((((((((..--....))))).((((((((((((((..(((((.........)))))...)))).)))...)))))))...)))). ( -29.20, z-score = -1.36, R) >consensus _______AUGUGGCAAGGGGG____CGAGCAUGGGUUAAGCCAAGCCAAGGGGGCAUAUUCAAAAUCAUAACAGAAAA_UGAUGGAUGAAUUGUCGCGCUGCUUGGCUCCAA ...............................(((....((((((((..(((.((((.(((((..((((...........))))...))))))))).).))))))))))))). (-19.84 = -20.78 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:33 2011