| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,373,684 – 3,373,777 |
| Length | 93 |
| Max. P | 0.510303 |
| Location | 3,373,684 – 3,373,777 |
|---|---|
| Length | 93 |
| Sequences | 13 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 71.76 |
| Shannon entropy | 0.58701 |
| G+C content | 0.56558 |
| Mean single sequence MFE | -32.43 |
| Consensus MFE | -13.58 |
| Energy contribution | -13.23 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3373684 93 + 24543557 AGUGCUGACGGAGCUGAUGCUCGGCUCCGAGUCGGAUGAGU---CUCCACCAUUCGAUUCGGAAGCCUCACUCCUUGUGUUGAAC---UCAAAGUCUUG--------- ......(((.((((....))))((((((((((((((((.((---....)))))))))))))).)))).(((.....)))......---.....)))...--------- ( -36.10, z-score = -2.83, R) >droSim1.chr3L 2908605 93 + 22553184 AGUGCUCACGGAGCUGAUGCUCGGCUCCGAGUCGGAGGAGU---CUCCACCAUUCGAUUCGGAAGCCUCACUCCUUGUGUUGAAC---UCAAAGUCUUG--------- (((...((((((((....))))((((((((((((((((...---.....)).)))))))))).))))........))))....))---)..........--------- ( -33.60, z-score = -1.62, R) >droSec1.super_2 3366194 93 + 7591821 AGUGCUCACGGAGCUGAUGCUCGGCUCCGAGUCGGAGGAGU---CUCCACCAUUCGAUUCGGAAGCCUCACUCCUUGUGUUGAAC---UCAAAGUCUUG--------- (((...((((((((....))))((((((((((((((((...---.....)).)))))))))).))))........))))....))---)..........--------- ( -33.60, z-score = -1.62, R) >droYak2.chr3L 3920278 93 + 24197627 AGUGCUCACCGAACUGAUACUGGGCUCCGAGUCGGAUGAGU---CCCCACCAUUCGAUUCGGAAGCCUCACUCCUUGUAUUGAAC---UCAAAGUCUUG--------- ((((.(((......)))))))(((((((((((((((((.((---....)))))))))))))).)))))...........(((...---.))).......--------- ( -28.90, z-score = -2.19, R) >droEre2.scaffold_4784 6063213 93 + 25762168 AGUGCUCACCGAGCUGAUACUGGGCUCCGAGUCGGAGGAGU---CCCCGCCAUUCGAUUCGGAAGCCUCACUCCUUGUAUUGAAC---UCAAAAUCUUG--------- ...((((...)))).(((((((((((((((((((((((...---.....)).)))))))))).)))).))......)))))....---...........--------- ( -28.80, z-score = -1.27, R) >droAna3.scaffold_13337 13223717 93 - 23293914 CGUGCUCACCGAACUGAUGCUGGGCUCGGAGUCACUAGAGU---CUCCGCCAUUCGACUCCGAGGCCUCACUCCGGGUAUUGAAU---UCAAAGUCCUG--------- ...(((((......))).)).((.(((((((((....((((---.......))))))))))))).)).......(((..(((...---.)))..)))..--------- ( -27.60, z-score = -0.27, R) >dp4.chrXR_group8 5462554 96 + 9212921 CGUGCUCACCGAACUGAUGCUAGGCUCCGAGUCGUCGGAGGACUCCCCGCCAUUCGAUUCGGAGGCCUCGCUGCGUGUGUUGAAC---UCAAAGUCCUG--------- .((...(((((.......((.(((((((((((((..((.((.....)).))...))))))))).)))).))..)).)))....))---...........--------- ( -32.90, z-score = -0.78, R) >droPer1.super_38 576806 96 - 801819 CGUGCUCACCGAACUGAUGCUAGGCUCCGAGUCGUCGGAGGACUCCCCGCCAUUCGAUUCGGAGGCCUCGCUGCGUGUGUUGAAC---UCAAAGUCCUG--------- .((...(((((.......((.(((((((((((((..((.((.....)).))...))))))))).)))).))..)).)))....))---...........--------- ( -32.90, z-score = -0.78, R) >droWil1.scaffold_180955 1079179 96 + 2875958 CGUACUCACCGAGCUUAUACUCGGCUCAGAGUCAUCCGAGCUGGCACCGCCAUUCGAUUCGGAUGCCUCACUUCGCGUAUUAAAC---UCAAAAUCCUG--------- .((((.(.(((((......)))))....(((.(((((((((((((...))))...).)))))))).))).....).)))).....---...........--------- ( -27.40, z-score = -2.77, R) >droVir3.scaffold_13049 18165684 99 - 25233164 CGUACUUACCGAGCUAAUGCUCGGCUCCGAGUCGGAGGCCAUGGAGCCAGCUCGCGAUUUGGACGCUUCACUGCGCGUGUCGAACGAAUCGAAGUCCUG--------- .(.((((..((((((...(((((((((((...)))).)))...)))).))))))(((((((..((...(((.....))).))..))))))))))).)..--------- ( -35.20, z-score = -0.56, R) >droMoj3.scaffold_6680 19420436 99 - 24764193 CGUGCUUACAGAGCUAAUGCUUGGCUCCGAGUCGGAGGCCAUGGAACCAGCUCGCGACUUGGAUGCCUCGCUUCGCGUGUCAAACGAAUCGAAGUCCUG--------- ..........((((....))))(((((((((((((((....((....)).))).))))))))).)))..(((((((((.....)))...))))))....--------- ( -35.30, z-score = -1.19, R) >droGri2.scaffold_15110 5779469 99 + 24565398 CGUGCUCACCGAACUAAUGCUCGGCUCCGAAUCGGAGGCCAUGGAGCCAGCUCGGGAUUUAGAAGCUUCACUGCGUGUGUCAAACGAAUCAAAGUCCUG--------- .(.((((.((((.(....).))))(((((...)))))......)))))....((((((((.((.((......)).(((.....)))..)).))))))))--------- ( -28.10, z-score = -0.00, R) >anoGam1.chr2L 25491116 108 - 48795086 CGAGCUAACCGAGCUGAUCGAUGGAUGCGACCCGUCGGCCUCGUCCGCGUCCGGCUCGUCCGCAUCCCCAUCGCCGGACGCUUCCGAUCGGGUGUCGUAUGAGUUUUC .(((((...(((.(((((((..(((((.(.((....)).).)))))(((((((((.................)))))))))...)))))))...)))....))))).. ( -41.13, z-score = -0.22, R) >consensus CGUGCUCACCGAGCUGAUGCUCGGCUCCGAGUCGGAGGAGU___CCCCACCAUUCGAUUCGGAAGCCUCACUCCGUGUGUUGAAC___UCAAAGUCCUG_________ ......................(((((((((((......................)))))))).)))......................................... (-13.58 = -13.23 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:31 2011