| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,370,637 – 3,370,732 |
| Length | 95 |
| Max. P | 0.661892 |
| Location | 3,370,637 – 3,370,732 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.11 |
| Shannon entropy | 0.34506 |
| G+C content | 0.51697 |
| Mean single sequence MFE | -30.33 |
| Consensus MFE | -20.10 |
| Energy contribution | -21.00 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.661892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3370637 95 + 24543557 GAAGCGUGAAAAUGUGGCAGUCACUGAGUGGAAUCGAUGGGGGGAUUGACGCGUGCCCAACUGGUGGGCCAAACACUUCGGAUUGCUACGGUUCG------ (((.(((....))(((((((((.(.((((((..(((((......)))))..)(.(((((.....))))))...))))).))))))))))).))).------ ( -33.80, z-score = -1.65, R) >droSim1.chr3L 2905552 95 + 22553184 GAAGCGUGAAAAUGUGGCAGUCAUUGAGUGGAAUCGAUGGGGGGAUUGACAGGUGCCCAACUGGUGGGCCAAACAGUUCGGAUUGCUACGGUUCG------ (((.(((....))((((((((((((((......)))))....((((((....(.(((((.....))))))...)))))).)))))))))).))).------ ( -32.30, z-score = -1.81, R) >droSec1.super_2 3363147 95 + 7591821 GAAGCGUGAAAAUGUGGCAGUCAUUGAGUGGAAUCGAUGGGGGGAUUGACAGGAGCCCAACUGGUGGGGCAAACAGUUCGGAUUGCUACGGUUCG------ (((.(((....))((((((((((((((......)))))....((((((......((((........))))...)))))).)))))))))).))).------ ( -29.50, z-score = -1.63, R) >droYak2.chr3L 3917244 98 + 24197627 GAAGCGUGAAAAUGUGGCAGUCAUUGAGUGAAAUCGAUGGGGGGG---AUUGGUGCCCAGCUAGUGGGCCAAACAGUUCGCAUUGCUACGGUUCGUAUUCG ((((((......(((((((((((((((......))))))..(.((---((((..(((((.....)))))....)))))).))))))))))...))).))). ( -33.90, z-score = -2.02, R) >droEre2.scaffold_4784 6060169 91 + 25762168 GAAGCGUGAAAAUGUGGCAGUCAUUGAGUGAAAUCGAUGGGGGG----AUUGGUGCCCAACUAGUGGGCCAAACAGUUCGCAUUGCUACGGUUCG------ (((.(((....))((((((((((((((......)))))).(.((----((((..(((((.....)))))....)))))).)))))))))).))).------ ( -33.00, z-score = -2.67, R) >droAna3.scaffold_13337 13220818 90 - 23293914 GGAGUUCGAAAGAGUGGCAGUCUUUGAAUGGAAUCGAUGGUGAU----AUAUGGACCUUUGAAGGAGUCGAAACAGUUCGAAU-ACUACAGUUCG------ ((.(((((((....((((..((((..((.((..((.(((.....----.))).))))))..)))).))))......)))))))-.))........------ ( -19.50, z-score = 0.14, R) >consensus GAAGCGUGAAAAUGUGGCAGUCAUUGAGUGGAAUCGAUGGGGGGA___ACAGGUGCCCAACUAGUGGGCCAAACAGUUCGGAUUGCUACGGUUCG______ (((.(((....))((((((((((((((......))))))...............(((((.....)))))............))))))))).)))....... (-20.10 = -21.00 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:29 2011