| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,345,520 – 3,345,648 |
| Length | 128 |
| Max. P | 0.890976 |
| Location | 3,345,520 – 3,345,648 |
|---|---|
| Length | 128 |
| Sequences | 6 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 71.90 |
| Shannon entropy | 0.51917 |
| G+C content | 0.39913 |
| Mean single sequence MFE | -25.75 |
| Consensus MFE | -13.31 |
| Energy contribution | -15.32 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.890976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3345520 128 + 24543557 GCCAUCCCAAGCUAUUGCUAUUUUUAUGCGAAGACCUCUCUUCUCGAGGGCUCUUCAGAAAGCACUCGAGAGUAAAAUUAUGCAUGAAAUGUUUGCACACA--AAACCGCAAAAAC-GUAUAAAAAAGUAU---- .........(((....))).((((((((((..........((((((((.(((........))).))))))))...................(((((.....--.....)))))..)-))))))))).....---- ( -29.00, z-score = -2.02, R) >droSim1.chr3L 2881714 128 + 22553184 GCCAUCCCAAGCUAUUGCUAUUUUUAUGCGAAGACCUCUCUUCUCGAGGGCUCUUCAGAAAGCACUCGAGAGUAAAAUUAUGCAUGAAAUGUUUGCACACA--AAACCGCAAAAAC-GUAUAAAAAAGUGU---- .........(((....))).((((((((((..........((((((((.(((........))).))))))))...................(((((.....--.....)))))..)-))))))))).....---- ( -29.00, z-score = -1.63, R) >droSec1.super_2 3337073 128 + 7591821 GCCAUCCCAAGCUAUUGCUAUUUUUAUGCGAAGACCUCUCUUCUCGAGGGCUCUUCAGAAAGCACUCGAGAGUAAAAUUAUGCAUGAAAUGUUUGCACACA--AAACCGCAAAAAC-GUAUAAAAAAGUGU---- .........(((....))).((((((((((..........((((((((.(((........))).))))))))...................(((((.....--.....)))))..)-))))))))).....---- ( -29.00, z-score = -1.63, R) >droYak2.chr3L 3892550 115 + 24197627 GCCAUCCCAAGCUAUU------UUUAUGCGAAGAGCUCUCUUUUCGAGGGCUCUUCAAAAACCACUCGAGAGUAAAAUUAUGCAUGAAACGUUUGCACACACAAAACCGCAAAAAAAGUGU-------------- .......(((((...(------((((((((((((((((((.....))))))))))).......(((....)))........)))))))).)))))...((((...............))))-------------- ( -31.66, z-score = -3.63, R) >droEre2.scaffold_4784 6035494 112 + 25762168 GCCAUCCCAAGCUAUU------UUUAUGCGAAGACCUCUCUUUUCGAGGGCUCUUCAAAAACCACUCGACAGUAAAAUUAUGCAUGAAAUGUUUGCACACA--AAACCGCAAAAAA-GUGU-------------- .......(((((...(------((((((((((((.(((((.....))))).))))).......(((....)))........)))))))).))))).((((.--.............-))))-------------- ( -25.44, z-score = -2.44, R) >droGri2.scaffold_15110 10809633 126 - 24565398 GCGCUCUCUAUCUAUC--UACCUCUAUCUGUCUAUGUCUCUCUCC------CCAUCAGAAAUCGACCCGUUUAUAAUUUAUGCACAAAUCCACUUUGGAGG-AAUUCUUGAAAAGCAACUCAUUUUUAUCCCUGU ................--..((((((...(((.((.(((......------.....))).)).)))..((.((((...)))).))..........))))))-......((((((........))))))....... ( -10.40, z-score = 1.63, R) >consensus GCCAUCCCAAGCUAUU__UAUUUUUAUGCGAAGACCUCUCUUCUCGAGGGCUCUUCAGAAAGCACUCGAGAGUAAAAUUAUGCAUGAAAUGUUUGCACACA__AAACCGCAAAAAC_GUAUAAAAAAGU_U____ ......................((((((((((((.(((((.....))))).))))).......(((....)))........)))))))...(((((............)))))...................... (-13.31 = -15.32 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:28 2011