| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,329,904 – 3,329,999 |
| Length | 95 |
| Max. P | 0.957718 |
| Location | 3,329,904 – 3,329,999 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 82.71 |
| Shannon entropy | 0.32907 |
| G+C content | 0.48017 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -16.70 |
| Energy contribution | -18.23 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3329904 95 + 24543557 AUAGUGUGUAUGCAUUGCUAUUCCCAGUGCUGCAG-UUGACUUUGACACUGAUCGCGAUCGCGAUUGCGAAUGCGAUCGCUCCCCCAAUUUUGAUU ..((((((((.((((((.......)))))))))((-....))...)))))(((((((.((((....)))).))))))).................. ( -28.00, z-score = -2.23, R) >droSim1.chr3L 2865036 95 + 22553184 AUAGUAUGUAUGCAUUGCUAUUCCCAGUGCUGCAG-UUGACUUUGACACUGAUCGCGAUCGCGAUUGCGAAUGCGAUCGCUCCCCCAAUUUUGAUU ..(((.((((.((((((.......))))))))))(-((......))))))(((((((.((((....)))).))))))).................. ( -27.00, z-score = -2.16, R) >droSec1.super_2 3321384 95 + 7591821 AUAGUAUGUAUGCAUUGCUAUUCCCAGUGCUGCAG-UUGACUUUGACACUGAUCGCGAUCGCGAUUGCGAAUGCGAUCGCUCCCCCAAUUUUGAUU ..(((.((((.((((((.......))))))))))(-((......))))))(((((((.((((....)))).))))))).................. ( -27.00, z-score = -2.16, R) >droYak2.chr3L 3876560 93 + 24197627 AUAGCC--UUUGCAUUGCUAUUCCCAGUGCUGCAG-UUGACUUUGACACUGAUCGCGAUCGCGAUUGCGAAUGCGAUCGCUCCCCCAAUUUCGAAU ...((.--...((((((.......)))))).))..-((((..(((....((((((((.((((....)))).))))))))......)))..)))).. ( -26.60, z-score = -2.23, R) >droEre2.scaffold_4784 6019528 91 + 25762168 ---AUA-GUAUGCAUUGCUAUUCCCAGUGCUGCAG-UUGACUUUGACACUGAUCGCGAUUGCGAUUGCGAAUGCGAUCGCUCCCCCAAUUUCGAUU ---...-(((.((((((.......)))))))))((-((((..(((....((((((((.((((....)))).))))))))......)))..)))))) ( -26.80, z-score = -2.51, R) >droAna3.scaffold_13337 14172679 72 + 23293914 ----------------GCUUUUCUAGCUUUUGUCGCUUGACUUUGACACUGAUCGCGAUUGCGAUC------GCGAUCGCUCCCCCAAUUCCAC-- ----------------........(((...(((((........)))))..(((((((((....)))------))))))))).............-- ( -19.30, z-score = -3.18, R) >consensus AUAGUA_GUAUGCAUUGCUAUUCCCAGUGCUGCAG_UUGACUUUGACACUGAUCGCGAUCGCGAUUGCGAAUGCGAUCGCUCCCCCAAUUUCGAUU ..........((((.((((......)))).))))..((((..(((....((((((((.((((....)))).))))))))......)))..)))).. (-16.70 = -18.23 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:27 2011