Locus 6050

Sequence ID dm3.chr3L
Location 3,317,630 – 3,317,739
Length 109
Max. P 0.958919
window8330

overview

Window 0

Location 3,317,630 – 3,317,739
Length 109
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 92.64
Shannon entropy 0.11437
G+C content 0.39314
Mean single sequence MFE -30.48
Consensus MFE -27.92
Energy contribution -28.05
Covariance contribution 0.13
Combinations/Pair 1.09
Mean z-score -2.15
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.66
SVM RNA-class probability 0.958919
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 3317630 109 - 24543557
UAAAUUGAAGCAAUUGCUUUAAUAAUAGACUAUGGAAUAUGGAUGAGUGACAUCUGUAUUAAGU----GCACGCCCUUGGGUUUCCCAGAAGUUCCUAGUCUAACCAGAGAUU
...((((((((....))))))))..(((((((.(((((.(((....(((.((.((......)))----))))(((....)))...)))...)))))))))))).......... ( -32.30, z-score =  -3.54, R)
>droSim1.chr3L 2852921 109 - 22553184
UAAAUGGAAGCAAUUGCUUUAAUAAUAGACUAUGGAAUAUGGAUGAGUGACAUCUGUAUCAAGU----GCACGCUCUUGGGUUUCCCAGAAGCUCCUAGUUUAAGCAGAGAUU
......(((((....))))).....(((((((.((((((((((((.....))))))))).....----....(((..((((...))))..))))))))))))).......... ( -29.40, z-score =  -1.74, R)
>droSec1.super_2 3309257 113 - 7591821
UAAAUGGAAGCAAUUGCUUUAAUAAUAGACUAUGGAAUAUGGAUGAGUGACAUCUGUAUCAAGUGCACGCACGCUCUAGGGUUUCCCAGAAGCUCCUAGUUUAAGCAGAGAUU
......(((((....))))).....(((((((.((((((((((((.....)))))))))...(((....)))(((((.(((...))))).))))))))))))).......... ( -29.80, z-score =  -1.46, R)
>droEre2.scaffold_4784 6007247 109 - 25762168
UAAAUGGAGGCAAUUGCUUUAAUAAUAGACUAUGGAAUAUGGAUGAGUGACAUCUGUAUUAAGU----GCACGCCCUUGGGUUUCCCAGAAGCUCCUAGUCUAACCAGAAGUG
....(((((((....))))......(((((((.((((((((((((.....))))))))).....----....((..(((((...)))))..)))))))))))).)))...... ( -30.40, z-score =  -1.88, R)
>consensus
UAAAUGGAAGCAAUUGCUUUAAUAAUAGACUAUGGAAUAUGGAUGAGUGACAUCUGUAUCAAGU____GCACGCCCUUGGGUUUCCCAGAAGCUCCUAGUCUAACCAGAGAUU
......(((((....))))).....(((((((.((((((((((((.....))))))))).............(((.(((((...))))).))))))))))))).......... (-27.92 = -28.05 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:23 2011