| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,253,649 – 4,253,744 |
| Length | 95 |
| Max. P | 0.978952 |
| Location | 4,253,649 – 4,253,744 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.13 |
| Shannon entropy | 0.12014 |
| G+C content | 0.53075 |
| Mean single sequence MFE | -32.79 |
| Consensus MFE | -30.30 |
| Energy contribution | -30.18 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.978952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4253649 95 + 23011544 CACCGCAUCAUCGGCUGUUGUAAUGGACGUGGUCUUGGCUAUCGAGUGUUUACGGUAGUCAAGGAAAUGGACUG--GGUUUGUGUCUGGCUCGUGGG ..((((..................(..(((..((((((((((((........))))))))))))..)))..).(--((((.......))))))))). ( -30.50, z-score = -1.42, R) >droSim1.chr2L 4174137 89 + 22036055 CACCGCAUCAUCGGCUGUUGUAAUGGACGUGGUCUUGGCUAUCGAGUGUUUACGGUAGUCAAGGAAAUGGACU---GGCUCGUGU-----CUGUGGG ..(((((.(((.(((((.......(..(((..((((((((((((........))))))))))))..)))..))---)))).))).-----.))))). ( -32.31, z-score = -2.56, R) >droSec1.super_5 2351803 89 + 5866729 CACCGCAUCAUCGGCUGUUGUAAUGGACGUGGUCUUGGCUAUCGAGUGUUUACGGUAGUCAAGGAAAUGGACU---GGCUCGUGU-----CUGUGGG ..(((((.(((.(((((.......(..(((..((((((((((((........))))))))))))..)))..))---)))).))).-----.))))). ( -32.31, z-score = -2.56, R) >droYak2.chr2L 4281326 94 + 22324452 CACCGCAUCAUCGGCUCUUGUAAUGGACGUGGUCUUGGCUAUCGAGUGUUUACGGUAGUCAAGGAAAUGGACUCGUGGCUCGUGUGU---CUGUGGG ..(((((.((((((((..((....(..(((..((((((((((((........))))))))))))..)))..).)).))).)).))).---.))))). ( -33.60, z-score = -2.33, R) >droEre2.scaffold_4929 4330082 89 + 26641161 CACCGCAUCAUCGGCCGUUGUAAUGGACGUGGUCUUGGCUAUCGAGUGUUUACGGUAGUCAAGGAAAUGGACU---GGCUCGUGU-----CUGUGGG ..(((((.(((.(((((.......(..(((..((((((((((((........))))))))))))..)))..))---)))).))).-----.))))). ( -35.21, z-score = -3.09, R) >consensus CACCGCAUCAUCGGCUGUUGUAAUGGACGUGGUCUUGGCUAUCGAGUGUUUACGGUAGUCAAGGAAAUGGACU___GGCUCGUGU_____CUGUGGG ..(((((.(((.((((........(..(((..((((((((((((........))))))))))))..)))..)....)))).))).......))))). (-30.30 = -30.18 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:49 2011