| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,315,831 – 3,315,898 |
| Length | 67 |
| Max. P | 0.738804 |
| Location | 3,315,831 – 3,315,898 |
|---|---|
| Length | 67 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 71.27 |
| Shannon entropy | 0.50028 |
| G+C content | 0.44733 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -10.06 |
| Energy contribution | -11.50 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3315831 67 - 24543557 ---------ACAUAU---GACACACAUAUGUG---UCAAACAUAUUGGACGA--UGAGGAUCCUCAGCAUUGUUCGCACCAGCA ---------.....(---((((((....))))---)))........((((((--((..(.....)..))))))))((....)). ( -19.30, z-score = -2.35, R) >droSim1.chr3L 2851059 84 - 22553184 AUACAUUAAACAUAUGCGGACAACCAUAUGUAAAUUUGAGCACGUUGGCCGAUGUGAGGAUCCUCAGCAUUGUUCGCACCAGCA .........(((((((.(.....))))))))............(((((.(((((((((....)))).)))))......))))). ( -20.70, z-score = -0.85, R) >droSec1.super_2 3307382 82 - 7591821 AUACAUUAAACAUAUGCGGACAACCAUAUGUAAAUUUGAGCACGUUGGACGA--UAAGGAUCCUCAGCAUUGUUCGCACCAGCA .........(((((((.(.....))))))))......(((((.(((((..((--(....))).)))))..)))))((....)). ( -16.50, z-score = -0.69, R) >droYak2.chr3L 3862482 78 - 24197627 AUGCUUGAAACAUGUGUGGAUAUUCCAGAAUA----UGAACACUUUGAGAGC--UGAGGGACCUCAGCAGUUUUCGCACCAGCA .(((..(((((..((((..(((((....))))----)..)))).......((--((((....)))))).))))).)))...... ( -23.30, z-score = -1.95, R) >droEre2.scaffold_4784 6000293 78 - 25762168 ACACAUCAAGCAUGUGUGGACAAUCCUGAAUA----UGAACACGUUGAGAGC--UGAGGGGCCUCAGCAUUGUUCGCACCAGCA .........((..(((((((((((.((.(((.----.......))).)).((--((((....)))))))))))))))))..)). ( -28.20, z-score = -2.47, R) >consensus AUACAUUAAACAUAUGCGGACAACCAUAUGUA___UUGAACACGUUGGACGA__UGAGGAUCCUCAGCAUUGUUCGCACCAGCA ..............(((((((((((((((((........))))).)))......((((....))))...)))))))))...... (-10.06 = -11.50 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:22 2011