| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,311,273 – 3,311,372 |
| Length | 99 |
| Max. P | 0.534003 |
| Location | 3,311,273 – 3,311,372 |
|---|---|
| Length | 99 |
| Sequences | 8 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 56.70 |
| Shannon entropy | 0.86510 |
| G+C content | 0.42569 |
| Mean single sequence MFE | -21.02 |
| Consensus MFE | -6.09 |
| Energy contribution | -6.21 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3311273 99 - 24543557 CAUAAUACGGCUUGGCUUACAAUUGUCAGAUCA-UUAAAUAAGUGGUUUUUGGGUGCGGAUCAACGAUCCGUAAUGAGUCGAAAUAUUAAAACCAUUUGC ........(..(((((........)))))..).-.....(((((((((((....((((((((...))))))))...............))))))))))). ( -24.01, z-score = -1.80, R) >droAna3.scaffold_13337 8891337 80 - 23293914 ---AAUCG-----CAACUGCUUCUCACAGAUUG-GCGCGCAACUGGG-ACUGGGUGCGGAUCAUUGAUCCGUAAUUACUCCCAAUACUGA---------- ---....(-----(...((((..((...))..)-))).))...((((-(.(((.((((((((...)))))))).))).))))).......---------- ( -23.00, z-score = -1.62, R) >droPer1.super_32 193470 91 - 992631 ---------CACAGAUCAACUCCGAUCGAUCCAAUCCGAUCGAAUCCACUGGGGUGCGGACUUUUAAUAUGUAAUUACUCUCAAUAGCAACAGCAAUUGC ---------.(((.......((((.((((((......))))))((((....)))).)))).........))).........((((.((....)).)))). ( -17.39, z-score = -0.56, R) >dp4.chrXR_group8 7933315 91 + 9212921 ---------CACAGAUCAACUCCGAUCGAUCCAAUCCGAUCGAAACCACUGGGGUGCGGACUUUUAAUAUGUAAUUACUCUCAAUAGCAAUAGCAAUUGC ---------.(((.......((((.((((((......)))))).(((.....))).)))).........))).........((((.((....)).)))). ( -16.69, z-score = -0.47, R) >droSim1.chr3L 2846532 99 - 22553184 CAUAAUACGGCUUGGCUUACAGUUGUCAGAUCA-UCAAAUAAGUGGGUUUUGGGUGCGGAUCAACGAUCCGUAAUGAGUGGAAAUAUUAAAGCCGUUUGC ......((((((((((((((..(((........-.)))....))))))).....((((((((...))))))))................))))))).... ( -24.00, z-score = -0.90, R) >droSec1.super_2 3303254 77 - 7591821 -----------------------CAUAAUACGGCUUGGCUUACAGGGUUUUGGGUGCGGAUCAACGAUCCGUAAUGAGUGAAAAUAUUAAAGCCGUUUGC -----------------------......(((((((.(((((........)))))(((((((...))))))).................))))))).... ( -20.10, z-score = -1.38, R) >droYak2.chr3L 3858631 94 - 24197627 UAUAAUAC-----GGCUUACUGCUGUCAGAUCA-UCAAAUAAGUGGGUUUUGAGCACGGAUCAACGAGCCGUAAUGAGUGGAAAUAUUAAAGCCAUUUGC .....(((-----(((((((....))..((((.-(((((.........))))).....))))...))))))))..((((((...........)))))).. ( -21.00, z-score = -0.70, R) >droEre2.scaffold_4784 5995771 94 - 25762168 CAUAAUAC-----GGCUUACUGCUGUCAGAUCA-UUAAAUAAGUGGGUUUUGGGCACGGAUCAACGAUCCGUAAUCAGUUGAAAUAUUAAAGCUGUUUGC ......((-----(((((.......((((.(((-((.....)))))...((((..(((((((...)))))))..)))))))).......))))))).... ( -21.94, z-score = -1.28, R) >consensus ___AAUAC_____GGCUUACUGCUGUCAGAUCA_UCAAAUAAGUGGGUUUUGGGUGCGGAUCAACGAUCCGUAAUGAGUCGAAAUAUUAAAGCCAUUUGC ......................................................((((((((...))))))))........................... ( -6.09 = -6.21 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:21 2011