| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,303,964 – 3,304,021 |
| Length | 57 |
| Max. P | 0.945409 |
| Location | 3,303,964 – 3,304,021 |
|---|---|
| Length | 57 |
| Sequences | 7 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 79.62 |
| Shannon entropy | 0.41884 |
| G+C content | 0.38388 |
| Mean single sequence MFE | -17.79 |
| Consensus MFE | -10.69 |
| Energy contribution | -11.24 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3303964 57 - 24543557 AAACAGAGUGUGUACAUACAUACACGUAUGUAUGCAAGUUAAUUGUGCACAGUCACA .....((.((((((((((((((....))))))))(((.....))))))))).))... ( -17.50, z-score = -1.82, R) >droSim1.chr3L 2839302 57 - 22553184 AAACAGAGUGUGUACAUACAUACGCGUAUGUAUGCAAGUUAAUUGUGCACAGUCACA .....((.((((((((((((((....))))))))(((.....))))))))).))... ( -17.50, z-score = -1.62, R) >droSec1.super_2 3296091 57 - 7591821 AAACAGAGUGUGUACAUACAUACACGUAUGUAUGCAAGUUAAUUGUGCACAGUCACA .....((.((((((((((((((....))))))))(((.....))))))))).))... ( -17.50, z-score = -1.82, R) >droYak2.chr3L 3851475 57 - 24197627 GAACAGAGUGUGUACAUACAUAUACGUAUGUAUGCAAGUUAAUUGUGCACAGUCACA .....((.((((((((((((((....))))))))(((.....))))))))).))... ( -16.60, z-score = -1.54, R) >droEre2.scaffold_4784 5988591 57 - 25762168 AAACAGAGUGUGUACAUACAUAUACGUAUGUAUGCAAGUUAAUUGUGCACAGUCACA .....((.((((((((((((((....))))))))(((.....))))))))).))... ( -16.60, z-score = -1.68, R) >droWil1.scaffold_180745 2572388 57 - 2843958 AAACAAAGCAUUUGCAUAUAUGCGUGAAUCUGCCCAGAUGAGCGGAGCAGAGUCACA .......((((........))))((((.(((((((........)).))))).)))). ( -19.40, z-score = -3.38, R) >apiMel3.GroupUn 161780888 54 + 399230636 --ACA-UGUGUGCGCAUGCAUAUAGAUUUGUAUGCAAGUUCAUUGCGUACAUACAGA --...-((((((((((((((((((....)))))))).......)))))))))).... ( -19.41, z-score = -2.50, R) >consensus AAACAGAGUGUGUACAUACAUACACGUAUGUAUGCAAGUUAAUUGUGCACAGUCACA .....((.((((((((((((((....))))))))(((.....))))))))).))... (-10.69 = -11.24 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:21 2011