| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,297,907 – 3,298,002 |
| Length | 95 |
| Max. P | 0.635606 |
| Location | 3,297,907 – 3,298,002 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 71.29 |
| Shannon entropy | 0.57117 |
| G+C content | 0.55636 |
| Mean single sequence MFE | -29.54 |
| Consensus MFE | -14.45 |
| Energy contribution | -16.27 |
| Covariance contribution | 1.82 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3297907 95 + 24543557 CCCAUGGACUACAGAAUCCCAGUCCGGGUUAUUCCCGUGGAAGUCCAACCUGUUCCCGCAAUCUCUGAGGCAUCAGAGGUCGCUAAGGAAAGCGC--- .(((((((((..........)))))(((.....)))))))............((((.((.((((((((....)))))))).))...)))).....--- ( -30.30, z-score = -1.39, R) >droSim1.chr3L 2833428 95 + 22553184 CCCAUGGACUACAGAAUCCCAGUCCGGGUUAUUCCCGUGGAAGUUCAGCCUGUUCCCGCAAUCUCUGAGGCAUCAGAGGUCGCUAAGGAAAGCGC--- .(((((((((..........)))))(((.....))))))).......((...((((.((.((((((((....)))))))).))...)))).))..--- ( -32.80, z-score = -1.96, R) >droSec1.super_2 3290211 95 + 7591821 CCCAUGGACUACAGAAUCCCAGUCCGGAUUAUUCCCGCGGAAGUCCAGCCUGUUCCCGCAAUCUUUGAGGCAUCAGAGGUCGCUAAGGAAAGCGC--- ....((((((....(((((......)))))..(((...)))))))))((...((((.((.((((((((....)))))))).))...)))).))..--- ( -29.00, z-score = -1.14, R) >droYak2.chr3L 3843614 95 + 24197627 CCCAUGGACUACAGAAUCCCAGUCCGGAUAAUUCCCGCGGAAAUCCAGCCUGUUCCCGCCAUCUCUGAGGCAUCAGAGGUCGCUAAGGAAAGCGU--- .....(((((..........)))))((((..((((...)))))))).((...((((.((.((((((((....)))))))).))...)))).))..--- ( -30.10, z-score = -1.58, R) >droEre2.scaffold_4784 5980882 95 + 25762168 CCCAUGGACUAUAGAAUCCCAGUCCGGGUUAUUCCCGUUGAAGUCCAGCCUGUUCCUGCAAUCUCUGAGGCAUCAGAGGUCGUUAAGGAAAGCGC--- ....((((((...(.....)....((((.....))))....))))))((...(((((((.((((((((....)))))))).))..))))).))..--- ( -31.00, z-score = -2.21, R) >droPer1.super_2892 4544 98 - 4943 CCCAUGGACUACCAGAUACCCGUGCAGGUGGUUCCCCUGGGGGAGGAGGAGGUGCAGCCACAGGCAGCCGAGGCAGUCCCUGAGGAGGCAACAGCCGC ((((.(((((.((.....(((.(.((((.(....))))).).).))....(((...(((...))).)))..)).))))).)).)).(((....))).. ( -36.00, z-score = 0.89, R) >droWil1.scaffold_180698 10214808 95 + 11422946 CCCGAGGACUAUCAAAUUCCCGUUCAGAUCGUCUCGAUGGAAAAAGAGCCCAUAACCGAGAUCGAUAUCAAGCCACUUGACGACAAAGAAGAAGU--- ..((.(((.........)))))(((..(((((((((((((.........))))...))))).)))).(((((...))))).......))).....--- ( -17.60, z-score = -0.31, R) >consensus CCCAUGGACUACAGAAUCCCAGUCCGGGUUAUUCCCGUGGAAGUCCAGCCUGUUCCCGCAAUCUCUGAGGCAUCAGAGGUCGCUAAGGAAAGCGC___ .((..(((((..........)))))(((.....)))..))............((((.((.((((((((....)))))))).))...))))........ (-14.45 = -16.27 + 1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:20 2011