| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,293,813 – 3,293,907 |
| Length | 94 |
| Max. P | 0.876520 |
| Location | 3,293,813 – 3,293,907 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.31 |
| Shannon entropy | 0.35988 |
| G+C content | 0.35504 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -15.84 |
| Energy contribution | -16.15 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3293813 94 + 24543557 GUCUCUUCAUUUUU---UAGUUUUUUAGUUUUGGGUGUGUGUGAAAGUCACUGCAUGAUGAUAUUUCGUUUGUUGCAUAAUCCUUCCACGCAAAUCG--- ..............---................(((.((((((.(((....((((.(((((....)))))...)))).....))).)))))).))).--- ( -18.40, z-score = -1.33, R) >droSim1.chr3L 2829317 93 + 22553184 -GUCUCAUUUUUUU---UAACUUUUUAGUUUUGGAUGUGUGUGAAAGUCACUGCAUGAUGAUAUUUCGUUUGUUGCAUAAUCCUUCCACGCAAAUCG--- -.............---.((((....))))...(((.((((((.(((....((((.(((((....)))))...)))).....))).)))))).))).--- ( -19.20, z-score = -1.77, R) >droSec1.super_2 3286290 92 + 7591821 GUCUCUU--UUUUU---UAGUUUUUUAGUUUUGGGUGUGUGUGAAAGUCACUGCAUGAUGAUAUUUCGUUUGUUGCAUAAUCCUUCCACGCAAAUCG--- .......--.....---................(((.((((((.(((....((((.(((((....)))))...)))).....))).)))))).))).--- ( -18.40, z-score = -1.57, R) >droYak2.chr3L 3839359 95 + 24197627 AACUCUAUUUUUUUAGUUUUUUUUUUAGUUUUGG--GUGUGUGAAAGCCACUGCAUGAUGAUAUUUCGUUUGUUGCAUAAUCCUUCCACGCAAAUCG--- .((((.......((((........))))....))--))(((((.(((....((((.(((((....)))))...)))).....))).)))))......--- ( -16.00, z-score = -0.67, R) >droEre2.scaffold_4784 5976714 86 + 25762168 -----GACUCUUUU---U---UUUUUAGUUUUGGAUGUGUGUGAAAGUCACUGCAUGAUGAUAUUUCGUUUGUUGCAUAAUCCUUCCACGCAAAUCG--- -----.........---.---............(((.((((((.(((....((((.(((((....)))))...)))).....))).)))))).))).--- ( -19.00, z-score = -1.83, R) >droAna3.scaffold_13337 15693040 95 - 23293914 -----GUUUCUUUUUCAUUAUUAUUACUUUAUGGGGCUGUGUGAAAGUCACUGCAUGAUGAUAUUUCGAUUGUUGCAUAAUCCUUCUACCCUCUUCUCGC -----...........................(((..((((..(.((((.(.....)..((....)))))).)..))))..)))................ ( -12.10, z-score = 0.72, R) >consensus __CUCUAUUUUUUU___UAAUUUUUUAGUUUUGGGUGUGUGUGAAAGUCACUGCAUGAUGAUAUUUCGUUUGUUGCAUAAUCCUUCCACGCAAAUCG___ .................................(((.((((((.(((....((((.(((((....)))))...)))).....))).)))))).))).... (-15.84 = -16.15 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:00:19 2011